Pairwise Alignments

Query, 347 a.a., Autoinducer 2 (AI-2) ABC transport system, periplasmic AI-2 binding protein LsrB from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Subject, 314 a.a., D-ribose ABC transporter, substrate-binding component RbsB (from data) from Herbaspirillum seropedicae SmR1

 Score = 66.2 bits (160), Expect = 1e-15
 Identities = 63/269 (23%), Positives = 119/269 (44%), Gaps = 10/269 (3%)

Query: 7   KMARHSIKMIALLTAFGLASAAMTVQAAERIAFIPKLVGVGFFTSGGNGAQEAGKALG-- 64
           K  R    + AL  A    +A     A  ++A + K +   FF +  NGA+E  KA    
Sbjct: 3   KFTRRHFAIAALACAVLPGAAMAQTPAKPKVALVMKSLANEFFLNMENGAREYQKANASK 62

Query: 65  IDVTYDG-PTEPSVSGQVQLVNNFVNQGYDAIIVSAVSPDGLCPALKRAMQRGVKILTWD 123
            D+  +G   E   + Q+++V   +    +A++++      L P +K+A+  G+ ++  D
Sbjct: 63  FDLIANGIKDEQDTANQIKIVEQMIVSKVNALVIAPADSKALVPVVKKAIDAGIIVVNID 122

Query: 124 S---DTKPECRSYYIN-QGTPKQLGSMLVEMAAHQVDKEKAKVAFFYSSPTVTDQNQWVK 179
           +   D   + +   +   G   + G+ L      +  ++  KVA      T  +  Q  +
Sbjct: 123 NKLDDAALKEKGITVPFVGPDNRKGAKLAGDYLGKQLQKGDKVAIIEGVSTTFNAQQ--R 180

Query: 180 EAKAKISQEHPGWEIVTTQFGYNDATKSLQTAEGIIKAYPDLDAIIAPDAN-ALPAAAQA 238
               + + +  G  +VT Q G  +  +  + A  I+ A+PD+ AI+A + N AL A A  
Sbjct: 181 TLGFQDAMKDVGANVVTVQSGQWEIDQGNKVAASILNAHPDIKAILAGNDNMALGAVAAI 240

Query: 239 AENLKRNNLAIVGFSTPNVMRPYVQRGTV 267
               K   + +VG+   N ++P ++ G V
Sbjct: 241 RAAGKTGKVQLVGYDNINAIKPMLKDGRV 269