Pairwise Alignments

Query, 347 a.a., Autoinducer 2 (AI-2) ABC transport system, periplasmic AI-2 binding protein LsrB from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Subject, 312 a.a., ABC transporter for L-fucose, substrate-binding component (from data) from Herbaspirillum seropedicae SmR1

 Score = 75.1 bits (183), Expect = 2e-18
 Identities = 63/253 (24%), Positives = 114/253 (45%), Gaps = 15/253 (5%)

Query: 21  AFGLASAAMTVQAAERIAFIPKLVGVGF----FTSGGNGAQEAGKALGIDVTYDGP-TEP 75
           A GLA A     A  + A+IP L+  GF    + +   GA +AGK   + VT++GP TE 
Sbjct: 10  ALGLAFAMGASAAQAQEAYIP-LISKGFQHQFWQAVKAGADQAGKDYKVKVTFEGPETEA 68

Query: 76  SVSGQVQLVNNFVNQGYDAIIVSAVSPDGLCPALKRAMQRGVKILTWDSDTK---PECRS 132
            V  Q+ +++  + +   AI  +A+      P LK+A    + ++ +DS      P   +
Sbjct: 69  MVDKQIDMLSAALAKKPQAIGFAALDSKAAIPLLKKAQAAKIPVVAFDSGVDSDIPVTTA 128

Query: 133 YYINQGTPKQLGSMLVEMAAHQVDKEKAKVAFFYSSPTVTDQNQWVKEAKAKISQEHPGW 192
              N+         + E+     + E A VA   +S T  D+     E   +I   +P  
Sbjct: 129 TTDNRAAAALAADKMAELVGK--EGEVAVVAHDQTSRTGVDRRDGFLE---RIKSAYPKI 183

Query: 193 EIVTTQFGYNDATKSLQTAEGIIKAYPDLDAIIAPDANALPAAAQAAENLKRNNLAIVGF 252
           ++V+ Q+G  D  KS +  + I++AYP +  I   +  +        + +KR  + I+G+
Sbjct: 184 KVVSVQYGAGDQLKSTEVTKSILQAYPKIKGIFGTNEGSAIGVVNGVKEMKR-KIIIIGY 242

Query: 253 STPNVMRPYVQRG 265
            +    +  ++ G
Sbjct: 243 DSGKQQKDAIREG 255