Pairwise Alignments

Query, 347 a.a., Autoinducer 2 (AI-2) ABC transport system, periplasmic AI-2 binding protein LsrB from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Subject, 335 a.a., LacI family transcription regulator from Herbaspirillum seropedicae SmR1

 Score = 94.4 bits (233), Expect = 4e-24
 Identities = 86/351 (24%), Positives = 145/351 (41%), Gaps = 24/351 (6%)

Query: 4   MEKKMARHSIKMIALLTAFGLASAAMTVQAAERIAFIPKLVGVGFFTSGGNGAQEAGKAL 63
           M KK A     +++ L A G ASA         I  + K+ G+ +F     G +E   A 
Sbjct: 2   MNKKSA---CVLVSALAAVGFASALQAQNKPIDIVTVVKITGISWFNRMEVGVKEFAAAN 58

Query: 64  -GIDVTYDGPTEPSVSGQVQLVNNFVNQGYDAIIVSAVSPDGLCPALKRAMQRGVKILTW 122
            G+     GP +   + Q +LV + V +  DAI V ++ P  L P LKRA+ RG+K++T 
Sbjct: 59  PGVTTRQIGPAQSDAAQQQRLVEDLVAKKVDAIAVVSMDPPTLEPVLKRALDRGIKVVTH 118

Query: 123 DSDTKPECR---SYYINQGTPKQLGSMLVEMAAHQVDKEKAKVAFFYSSPTVTDQNQWVK 179
           ++D +         + N     +L   L          +  K +    S     Q QW  
Sbjct: 119 EADNQKNTLVDIEAFDNTAYGARLNDRLAACMG-----QAGKWSSLVGSLGSQSQVQWAD 173

Query: 180 EAKAKISQEHPGWEIVTTQ-FGYNDATKSLQTAEGIIKAYPDLDAIIAPDANALPAAAQA 238
              A  ++++P   +V  +    NDA K+   A+ I++ +PD+       +  +    +A
Sbjct: 174 GGAANAAKKYPKMTLVDAKNESANDAEKAYAKAKEILRKHPDIKGFQGSSSLDVLGIGRA 233

Query: 239 AENL-KRNNLAIVGFSTPNVMRPYVQRGTVKEFGLWDVVQQGKISVYVANALLKNMPMNV 297
            E    +  + + G   P+    +++ G V     WD    G      A  L++   +  
Sbjct: 234 VEEAGLQGKVCVYGTGLPSEAAKFLESGAVGGIAFWDPKDAGLAMNKAAMMLVQGKKITD 293

Query: 298 GDSLDIPGIGKVTVSPNSEQGYHYEAKGNGIVLLPER-VIFNKDNIDKYDF 347
           G  L IPG  KVTV          +  G G+++  +  V  +K N  +Y F
Sbjct: 294 GMDLGIPGYNKVTVK---------KGPGVGVIVTGQAWVEVDKKNYKQYAF 335