Pairwise Alignments

Query, 344 a.a., Outer membrane protein NlpB, lipoprotein component of the protein assembly complex (forms a complex with YaeT, YfiO, and YfgL); Lipoprotein-34 precursor from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Subject, 365 a.a., lipoprotein-34 NlpB (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  100 bits (250), Expect = 4e-26
 Identities = 85/357 (23%), Positives = 149/357 (41%), Gaps = 31/357 (8%)

Query: 10  LAKVAGVSLVLLLAACSSDSRYKRQVSGDESYLDAAPLAELHAPAGMILPITTGDYVIPV 69
           L KV  + LV  +AACSS    +RQ +G E Y+ A     L  P G+  P    +Y +P 
Sbjct: 2   LKKVTPLFLVAAVAACSSPLE-RRQANGGEDYVQAEQAPMLKIPEGLKTPPYNKEYDVPA 60

Query: 70  T---KGSGAVGKALDIRPPAQPLALVSGARTQFSGDTATLLVEN-----GRSSTLWPQVV 121
                    VGK LDIRPP Q L +  G   +   D   ++VE+          ++  + 
Sbjct: 61  LGPKANPALVGKNLDIRPPLQVLPMAEGTHVEEGSDNIKIVVESIDNNVDLKQEIFTNLD 120

Query: 122 SVIQAKNYPIEKRDDASQTLTTDWVNWNRLDE------DEQY----RGRYQISVKPQGYQ 171
                +  PI  RD    ++ TDW+    + E      D++Y    R R+ +  +P G  
Sbjct: 121 DFFAKQAIPIRSRDFDKGSIETDWIESREVLESSLWGSDKEYLLRQRYRFDVETRPHGRT 180

Query: 172 QAVTVKLVNLEQ-----AGKPVADAASLQRYSTEMMNVISAGLDKTATDAANAAQNRSAA 226
             + + LV  E+       K +      QRY+ +M+N   A +         A + +   
Sbjct: 181 ANIVIHLVEHEEFYDGKEQKVMLSGEDKQRYTIDMLNSAIAYMSVKREQTIQANRLKQTL 240

Query: 227 TMDVQSAADDTGLPMLVVRGPFNLVWQRLPAALEKVGMKVTDSTRSQGSMAVTYKPLSDS 286
            ++V     + G      +  +  VW RL   L ++G +++D   ++G   + +   +  
Sbjct: 241 GINVDLITPEEGAAYWSAKAAYKQVWDRLRIVLPEMGFEISDMDSAKGLYFIKFTD-NSG 299

Query: 287 DWRDLGASDP-GLASGDYK--LQVGDLDNRSSLQFIDPKGHTLTQSQNDALVAVFQA 340
            W  L  ++   L  G Y+  L+ GD  + + +   D +   L+   ND +  V+++
Sbjct: 300 FWSSLWNNNQLSLKEGSYRLLLEDGDTPDETKIWLRDAEDQPLS---NDVVSKVYES 353