Pairwise Alignments

Query, 454 a.a., GTPase and tRNA-U34 5-formylation enzyme TrmE from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Subject, 457 a.a., tRNA modification GTPase TrmE (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  248 bits (634), Expect = 2e-70
 Identities = 176/471 (37%), Positives = 259/471 (54%), Gaps = 31/471 (6%)

Query: 1   MSHNDTIVAQATPPGRGGVGILRISGLKARDVAQEVLGKLPKP---RYADYLPFKDVDGS 57
           M H+DTI A ATP G+GG+GI+RISG      + EVL  L +P   R+  + P+    G+
Sbjct: 1   MQHDDTIAAIATPLGQGGIGIIRISG----PASLEVLRALFRPSSSRFGGFRPWTLHHGT 56

Query: 58  A------LDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTLPGVRIARPGEF 111
                  LD  +A+  PGP +FTGEDV E+  HGG  +L  +L+  +   G R A  GEF
Sbjct: 57  ITDGCDPLDDVLAVHMPGPRTFTGEDVSEIHCHGGSGVLAAVLEACVR-HGARYAERGEF 115

Query: 112 SERAFLNDKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVE 171
           + RAFLN ++DL QAEA+A++I A S +  R A   L G    RV  L   L  LR+ + 
Sbjct: 116 TRRAFLNGRMDLTQAEAVAEMIAAPSREGMRLAQAKLDGLLGQRVGALRARLDALRMQLC 175

Query: 172 AAIDFPDEEIDFLSD----GKIEAQLNGVIADLDAVRTEARQGSLLREGMKVVIAGRPNA 227
            A+DFP+EE++ L+      +IEA   GV+ +L A     R     ++G  VV+AG+ NA
Sbjct: 176 VAVDFPEEEVECLAPEAFLAEIEAVRQGVV-ELSAGYARTR---CWQDGALVVLAGQVNA 231

Query: 228 GKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVERIGIE 287
           GKSSL+NAL GR  AIVTD+ GTTRD + E +++ G+ + + DTAGLR+  D VE+ G+ 
Sbjct: 232 GKSSLMNALLGRRRAIVTDLPGTTRDFIEEPLNLSGLAIRLADTAGLRETGDIVEQEGVR 291

Query: 288 RAWQEIEQADRVLFMVDGTTTDAVDPADIWPDFIARLPKNLPITVVRNKADITGETLGIS 347
            +   + QAD VL + D   T  +   ++    + R      + VV NK D+    +  S
Sbjct: 292 MSRDLVAQADLVLLVTD--ATQGLQGPEL---ELLRHAGPERVLVVFNKTDLLEGRILPS 346

Query: 348 EVNGHSLVRLSARTGEGIDVLRNHLKQSMGFDTNM---EGGFLA-RRRHLQALAEAAEHL 403
              G   V ++A +G+G++ L   ++ ++   T     E G LA   R   AL +AA  L
Sbjct: 347 TPEGCRSVHVAAASGDGVESLVTAIRAAVLAATGAGEPEAGELAPNMRQAAALDKAATIL 406

Query: 404 EQGKAQLLGAWAGELLAEELRLAQQSLSEITGEFTSDDLLGRIFSSFCIGK 454
           ++    +      +L    L  A  +L ++TG+ T + +L  IF+SFCIGK
Sbjct: 407 DELAGDIRAHVPYDLCGVRLDGACAALMDVTGQSTPEAILDAIFASFCIGK 457