Pairwise Alignments

Query, 454 a.a., GTPase and tRNA-U34 5-formylation enzyme TrmE from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Subject, 465 a.a., putative GTPase, ThdF family (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  238 bits (606), Expect = 4e-67
 Identities = 156/469 (33%), Positives = 256/469 (54%), Gaps = 22/469 (4%)

Query: 3   HNDTIVAQATPPGRGGVGILRISGLKARDVAQEVL-----GKLPKPRYADYLPFKDVDGS 57
           + DTI A AT  G G +G +R+SG +A  +   +      GKL   +    L F  +   
Sbjct: 2   NQDTICAIATAQG-GAIGSIRVSGPEAISITSRIFQPAKAGKLLSEQKPYTLTFGRIYNG 60

Query: 58  --ALDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTLPGVRIARPGEFSERA 115
              +D+ +   F  P+S+TGED  E+  HG   IL  +++ +L   G R+A+PGE+++RA
Sbjct: 61  EEVIDEVLVSLFRAPHSYTGEDSTEITCHGSSYILQQVMQ-LLIKNGCRMAQPGEYTQRA 119

Query: 116 FLNDKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAID 175
           FLN K+DL+QAEA+ADLI +SS    R A++ ++G FS  +  L   L +    +E  +D
Sbjct: 120 FLNGKMDLSQAEAVADLIASSSAATHRLAMSQMRGGFSKELTDLRSKLLNFTSMIELELD 179

Query: 176 FPDEEIDFLSDGKIEAQLNGVIADLDAVRTEARQGSLLREGMKVVIAGRPNAGKSSLLNA 235
           F +E+++F     +    + +   +  +      G+ ++ G+ V I G  NAGKS+LLN 
Sbjct: 180 FSEEDVEFADRSALRKLADEIEQVISRLVHSFNVGNAIKNGVPVAIIGETNAGKSTLLNV 239

Query: 236 LAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQ 295
           L   + AIV+DI GTTRDV+ + I+I G+    IDTAG+R+ +D +E +GIER +Q+++Q
Sbjct: 240 LLNEDKAIVSDIHGTTRDVIEDTINIGGITFRFIDTAGIRETNDTIESLGIERTFQKLDQ 299

Query: 296 ADRVLFMVDGTTTDAVDPADIWPDFIARLPKNLPITVVRNKADITGETLGISEVNG---- 351
           A+ VL+MVD  ++DA        + I    +   + VV NKAD+  E +   E++     
Sbjct: 300 AEIVLWMVD--SSDASSQIKQLSEKIIPRCEEKQLIVVFNKADLI-EEMQKEELSALLKN 356

Query: 352 -----HSLVRLSARTGEGIDVLRNHLKQSMGFDTNMEGGFLARR-RHLQALAEAAEHLEQ 405
                   + +SA+     D L+  L  +    T  +   +    RH +AL++A + + +
Sbjct: 357 FPKEYTKSIFISAKERRQTDELQKMLINAAHLPTVTQNDIIVTNVRHYEALSKALDAIHR 416

Query: 406 GKAQLLGAWAGELLAEELRLAQQSLSEITGEFTSDDLLGRIFSSFCIGK 454
            +  L    +G+ L++++R     +S+I GE T+D +L  IF  FCIGK
Sbjct: 417 VQDGLDSHISGDFLSQDIRECIFFISDIAGEVTNDMVLQNIFQHFCIGK 465