Pairwise Alignments

Query, 673 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 1264 a.a., Sensory box/GGDEF family protein from Pseudomonas sp. S08-1

 Score = 74.7 bits (182), Expect = 2e-17
 Identities = 50/179 (27%), Positives = 81/179 (45%), Gaps = 7/179 (3%)

Query: 495 KEIARNQAFQATLVESEEKYRNLFDKAPVGHVLKRLEDSQFVAINQAFTEITGYTLEELQ 554
           ++I   +  Q  L  SEEK+   F  +P G ++ R+ D   +  N  F  ITG+   +  
Sbjct: 565 RDITEVKRTQQQLQLSEEKFAKAFHASPDGLLITRVRDGMILEANDGFFRITGHDSHQAV 624

Query: 555 ALEPWDLTPVRYRASEAEQLERLKQTHRYGPYQKHYRHKDGRLVAVRLNGSLVTAA---N 611
                ++            +E+++       ++      +G+    R  G L        
Sbjct: 625 GHTTLEIGLWADPQDRDSMIEQIRANGSINDFRAWINTSNGQ----RRLGDLAVQPIMIE 680

Query: 612 GEPLILFVVEDITEQERTVARVNLLAQVFQQSGEGITIIDANDIIVDVNSAFTQITGYS 670
           GEP +L +  DITE+E+   R++  A VF+ + EG+ I D +  I  VN AFT ITGYS
Sbjct: 681 GEPCMLIIARDITEREQMQERLHQAATVFESTAEGVMITDLDQRITAVNRAFTTITGYS 739



 Score = 51.6 bits (122), Expect = 2e-10
 Identities = 42/165 (25%), Positives = 76/165 (46%), Gaps = 7/165 (4%)

Query: 510 SEEKYRNLFDKAPVGHVLKRLEDSQFVAINQAFTEITGYTLEELQALEPWDLTPVRYRAS 569
           SEEK+  +F   P   V+ R  D   + +N+ F +  G + +E       +L      + 
Sbjct: 456 SEEKFELVFHNCPDILVIARRLDGVLLTVNRTFEQELGISAQEAIGKTATELDIWGLPSI 515

Query: 570 EAEQLERLKQTHRYGPYQKHYRHKDGRLVAVRLNGSLVTAANGEPLILFVVEDITEQERT 629
               L+RL+Q       +  +R + G      ++   +   +G+P ++  V DITE +RT
Sbjct: 516 GPVLLDRLQQ-RILNNIEMPFRRRSGEQFTGLISAQHIEM-DGQPALVIAVRDITEVKRT 573

Query: 630 VARVNL----LAQVFQQSGEGITIIDAND-IIVDVNSAFTQITGY 669
             ++ L     A+ F  S +G+ I    D +I++ N  F +ITG+
Sbjct: 574 QQQLQLSEEKFAKAFHASPDGLLITRVRDGMILEANDGFFRITGH 618



 Score = 35.0 bits (79), Expect = 2e-05
 Identities = 48/187 (25%), Positives = 83/187 (44%), Gaps = 13/187 (6%)

Query: 493 LSKEIARNQAFQATLVESEEKYRNLFDKAPVGHVLKRLEDSQFVAINQAFTEITGYTLEE 552
           L +E+   +  +  L +SE+ YR L +         R+ED +F  ++    ++ G+ L E
Sbjct: 313 LRQEMRGRKELEERLRDSEQHYRGLVESLNAVAWQMRMEDLRFTYVSPHAEKLLGHPLAE 372

Query: 553 LQALEP--WDLTPVRYRASEAEQLERLKQTHRYGPYQKHYR--HKDGRLVAVRLNGSLVT 608
              LEP  W        A+ A+Q   L ++     +   YR    DG  V +R   +L+ 
Sbjct: 373 W--LEPGFWQRALHPDDAARAKQY-CLTESQAGRDHSLDYRMLAADGSTVWIRDIVTLIP 429

Query: 609 AANGEPLILFVVEDITEQERTVARVNLLAQ----VFQQSGEGITIIDAND-IIVDVNSAF 663
            ++G  L+  ++ DI+E +RT     L  +    VF    + + I    D +++ VN  F
Sbjct: 430 NSDG-TLLRGLMIDISEGKRTEQAQRLSEEKFELVFHNCPDILVIARRLDGVLLTVNRTF 488

Query: 664 TQITGYS 670
            Q  G S
Sbjct: 489 EQELGIS 495



 Score = 35.0 bits (79), Expect = 2e-05
 Identities = 44/174 (25%), Positives = 72/174 (41%), Gaps = 19/174 (10%)

Query: 475 SSGERYRIADKVAEKTMALSKE----IARNQAFQATLVESEEKYRNLFDKAPVGHVLKRL 530
           S+G+R R+ D   +  M   +     IAR+   +  + E   +   +F+    G ++  L
Sbjct: 663 SNGQR-RLGDLAVQPIMIEGEPCMLIIARDITEREQMQERLHQAATVFESTAEGVMITDL 721

Query: 531 EDSQFVAINQAFTEITGYTLEELQALEPWDLTPVRYRASEAEQLERLKQTHRYGPYQKHY 590
            D +  A+N+AFT ITGY+  E     P  L   R+ ++    +        +   +   
Sbjct: 722 -DQRITAVNRAFTTITGYSEAEALGQSPRLLASGRHDSAFYAAMWHQLAAEGHWQGEIWN 780

Query: 591 RHKDGRLV-------AVRLNGSLVTAANGEPLILFVVEDITEQERTVARVNLLA 637
           R KDG L        AVR    L+T   G      V  DI+  +   AR++  A
Sbjct: 781 RRKDGELFPEWLTISAVRDQSGLITHFVG------VFADISSLKHAQARLDYQA 828