Pairwise Alignments

Query, 673 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 959 a.a., Sensory box/GGDEF family protein from Pseudomonas sp. S08-1

 Score = 56.6 bits (135), Expect = 5e-12
 Identities = 58/192 (30%), Positives = 92/192 (47%), Gaps = 14/192 (7%)

Query: 485 KVAEKTMAL---SKEIARNQAFQATLVESEEKYRNLFDKAPVGHVLKRLEDSQFVAINQA 541
           +VA++T+ L   S  + +++A  A  +E+ E    L+D       +          I+Q 
Sbjct: 260 RVAQRTLELDDASHALGKSEARLALALEASEL--GLWDWDLQTDEVHHSHLESIFGISQE 317

Query: 542 FTEITGYTLEELQALEPWDLTPVRYRASEAEQLERLKQTHRYGPYQKHYRHKDGRLVAVR 601
             E+ G        L P DL P+  RA     +E LK        +   RH DGR + V 
Sbjct: 318 --EVKGVLSHLKPRLHPDDL-PLLRRAL----VEHLKGRTDGYCVEYRVRHADGRWLWVE 370

Query: 602 LNGSLVTA-ANGEPL-ILFVVEDITEQERTVARVNLLAQVFQQSGEGITIIDANDIIVDV 659
             G  V   A G+ + +L    DITE++R      L A VF+ + EGI I+DA+ +++ V
Sbjct: 371 DRGRAVERNAQGQVVRMLGTRRDITERKRQDEEHRLAATVFEATSEGIVILDADYLLLSV 430

Query: 660 NSAFTQITGYSR 671
           N AF+++TGY +
Sbjct: 431 NQAFSEVTGYRK 442



 Score = 33.1 bits (74), Expect = 6e-05
 Identities = 32/123 (26%), Positives = 55/123 (44%), Gaps = 19/123 (15%)

Query: 532 DSQFVAINQAFTEITGYTLEELQALEPWDLTPVRYRASEAEQLERLKQTHRYGPYQKHYR 591
           D   +++NQAF+E+TGY  EE+       L   R  A    QL R ++  R+G ++    
Sbjct: 424 DYLLLSVNQAFSEVTGYRKEEVLGRSVATLISSR-DARRQYQLIR-QELERHGSWR---- 477

Query: 592 HKDGRLVAVRLNGSLV-------TAANGEPLILFVV---EDITEQERTVARVNLLAQVFQ 641
              G L   R NG L           +G   +  +V    D++++ +T  R+  L+   +
Sbjct: 478 ---GELTETRKNGELYPQWLQLNVVRDGRGRVSHIVGFFSDLSQRRQTEERLRYLSHYDE 534

Query: 642 QSG 644
            +G
Sbjct: 535 LTG 537