Pairwise Alignments

Query, 673 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 750 a.a., diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) from Pseudomonas sp. S08-1

 Score = 57.4 bits (137), Expect = 2e-12
 Identities = 49/185 (26%), Positives = 86/185 (46%), Gaps = 9/185 (4%)

Query: 492 ALSKEIARNQAFQATLVESEEKYRNLFDKAPVGHVLKRLEDSQFVAINQAFTEITGYTLE 551
           AL++     +  ++ L  SEE+     + A  G     ++  Q V  ++ + ++ GYTLE
Sbjct: 61  ALNQYRLEQRRARSALKHSEERLALALESAQEGLWDWDMQSGQ-VYYSRQYCDMLGYTLE 119

Query: 552 ELQALEPWDLTPVRY--RASEAEQLERL---KQTHRYGPYQKHYRHKDGRLVAVRLNGSL 606
           E  A     L+ +    R    ++L+ L   + TH    ++   RH+DG    +   G +
Sbjct: 120 EFGATNDSWLSRLHPDDRERAGQRLKTLLAGRSTHDESSFRM--RHRDGGYRWLHYRGQM 177

Query: 607 VTAANGEPL-ILFVVEDITEQERTVARVNLLAQVFQQSGEGITIIDANDIIVDVNSAFTQ 665
           +  A G+P   +    D+T +      +   A VF  + EG+ + D    IV VN AF++
Sbjct: 178 LLDAQGQPSRFIGTASDVTRRRADEDSLRQAAAVFDSTLEGVLVTDREQRIVHVNPAFSR 237

Query: 666 ITGYS 670
           ITGY+
Sbjct: 238 ITGYA 242



 Score = 28.1 bits (61), Expect = 0.002
 Identities = 25/104 (24%), Positives = 47/104 (45%), Gaps = 5/104 (4%)

Query: 494 SKEIARNQAFQATLVESEEKYRNLFDKAPVGHVLKRLEDSQFVAINQAFTEITGYTLEEL 553
           + ++ R +A + +L ++      +FD    G VL    + + V +N AF+ ITGY ++E+
Sbjct: 192 ASDVTRRRADEDSLRQAAA----VFDSTLEG-VLVTDREQRIVHVNPAFSRITGYAVDEV 246

Query: 554 QALEPWDLTPVRYRASEAEQLERLKQTHRYGPYQKHYRHKDGRL 597
               P  L   R+  +  + L     +      +   R KDG +
Sbjct: 247 LGKLPSLLKSGRHDEAFYQSLWHALNSRGAWSGEVWNRRKDGEV 290