Pairwise Alignments

Query, 673 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 1289 a.a., diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) from Pseudomonas sp. S08-1

 Score = 75.1 bits (183), Expect = 2e-17
 Identities = 56/181 (30%), Positives = 91/181 (50%), Gaps = 17/181 (9%)

Query: 499 RNQAFQATLVESEEKYRNLFDKAPVGHVLKRLEDSQFVAINQAFTEITGYTLEELQALEP 558
           R Q   A  ++SE ++R  F++A VG +     D +++ +NQ   ++  Y  EEL AL  
Sbjct: 598 RQQQRDAERLQSELRFRATFEQAAVG-IAHLAPDGRWLRVNQRLCQMLDYDREELLALTF 656

Query: 559 WDLTPVRYRASE--------AEQLERLKQTHRYGPYQKHYRHKDGRLVAVRLNGSLVTAA 610
            D+T       +        A ++ RL         +K Y  +DG+++   L+ +LV   
Sbjct: 657 QDITHPDDLDKDMGLTGQLLAGEIPRLT-------LEKRYLRRDGKVLWANLSATLVRHT 709

Query: 611 NGEP-LILFVVEDITEQERTVARVNLLAQVFQQSGEGITIIDANDIIVDVNSAFTQITGY 669
           NGEP   + VVEDI  +++    ++  A VF+ + E + I+DA   I+  N AFT ITG 
Sbjct: 710 NGEPHYFISVVEDIGVRKQQERALHQAATVFESTQEAVVIVDARRRILTSNPAFTAITGL 769

Query: 670 S 670
           S
Sbjct: 770 S 770



 Score = 40.8 bits (94), Expect = 4e-07
 Identities = 43/179 (24%), Positives = 81/179 (45%), Gaps = 14/179 (7%)

Query: 504 QATLVESEEKYRNLFDKAPVGHVLKRLEDSQFVAINQAFTEITGYTLEEL--QALEPWDL 561
           +  L ESE+++R LF++ P   V     + + +  NQA T++ GY + +   + LE   +
Sbjct: 187 ELALRESEQRFRQLFEQTPRIAVQGYDRERRVIFWNQASTQLYGYDVADAMGRRLEELII 246

Query: 562 TPVRYRASEAEQLERLKQTHRYGP----YQKHYRHKDGRLVAVRLNGSLVTAANGEPLIL 617
            P    A  ++ +  ++     GP     +   +H+DG  V V  +  ++     +  + 
Sbjct: 247 PP----AMRSQVVSDIQNWMIGGPAIPAAELTLQHRDGSEVHVYSSHLILRNTRNQVELY 302

Query: 618 FVVEDITEQ----ERTVARVNLLAQVFQQSGEGITIIDANDIIVDVNSAFTQITGYSRR 672
            V  D+ +Q    +   A      ++ +Q  E I + D+   +  VN A+  ITGYS R
Sbjct: 303 CVDIDLGQQKSAHQELEASEARYRELVEQLHEAIFLTDSAGRLTFVNPAWQTITGYSIR 361