Pairwise Alignments

Query, 673 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 972 a.a., diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) from Pseudomonas sp. S08-1

 Score = 62.8 bits (151), Expect = 7e-14
 Identities = 37/143 (25%), Positives = 67/143 (46%), Gaps = 1/143 (0%)

Query: 495 KEIARNQAFQATLVESEEKYRNLFDKAPVGHVLKRLEDSQFVAINQAFTEITGYTLEELQ 554
           ++I   QA +A L  S+EK+   F  +P    +   +  +++ +N+ F  +TGY  EE+ 
Sbjct: 393 RDITERQAAEAALKASQEKFAKAFHSSPDAITITERDSGRYIEVNEGFCRLTGYRPEEVI 452

Query: 555 ALEPWDLTPVRYRASEAEQLERLKQTHRYGPYQKHYRHKDGRLVAVRLNGSLVTAANGEP 614
                +L    Y    A  +E + +  R    + H +H+DG +  V ++   +   N  P
Sbjct: 453 GRSSKELNVWAYPEERARMVETIVKEGRAYHLEMHGQHRDGSIRLVEVSVEPI-ELNNTP 511

Query: 615 LILFVVEDITEQERTVARVNLLA 637
            +L    DI+E +   A+V  LA
Sbjct: 512 CLLLNARDISELKEAQAQVRHLA 534



 Score = 26.2 bits (56), Expect = 0.008
 Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 9/79 (11%)

Query: 554 QALEPWDLTPVRYRASEAEQLERLKQTHRYG-PYQKHYRHK----DGRLVAVRLNGSLVT 608
           Q ++  +L P   RA    +++RL Q    G P     RH+    DG L  + ++G    
Sbjct: 71  QRVDYIELIPEEDRA----KVQRLFQQVLDGKPIPDALRHRIRWPDGSLHWLEISGRPQL 126

Query: 609 AANGEPLILFVVEDITEQE 627
            ANG   +  V+ +ITEQ+
Sbjct: 127 DANGRKRVFGVIREITEQQ 145