Pairwise Alignments

Query, 673 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 1092 a.a., hypothetical protein from Pseudomonas sp. RS175

 Score = 62.8 bits (151), Expect = 8e-14
 Identities = 51/210 (24%), Positives = 96/210 (45%), Gaps = 14/210 (6%)

Query: 469 SGMTLISSGERYRIAD----KVAEKTMALSKEIARNQAFQATLVESEEKYRNLFDKAPVG 524
           S   L S    YR  D    ++A   + ++ ++ R Q+  A    SEEK+  LF  +P  
Sbjct: 369 SSRYLESRARLYRNDDGSPLRMAGTLLDITDQVEREQSLAA----SEEKFATLFQVSPDP 424

Query: 525 HVLKRLEDSQFVAINQAFTEITGYTLEELQALEPWDLTPVRYRASEAEQLERLKQTHRYG 584
             L   +  +F+ IN +FT+  G+T  ++      ++       S  +++ER+ +     
Sbjct: 425 ICLTHQDSGRFLEINSSFTQTFGWTASDVIGRSADEIGLWDASGSSLQRIERVIREQSLS 484

Query: 585 PYQKHYRHKDGRLVAVRLNGSLVTAANGEPLILFVVEDITEQERTVARVNL----LAQVF 640
                  H+ G  +   ++   +   N +P I+  + DIT+Q+R+ A +       A+ F
Sbjct: 485 NVAIVVHHRSGHPLTCVISSRQINVDN-QPCIVTTLRDITQQQRSEAALKASEEKFAKAF 543

Query: 641 QQSGEGITIID-ANDIIVDVNSAFTQITGY 669
             S + ITI +  +   ++VN  F ++TGY
Sbjct: 544 HSSPDAITITERESGRYLEVNDGFCRLTGY 573



 Score = 46.2 bits (108), Expect = 8e-09
 Identities = 32/143 (22%), Positives = 61/143 (42%), Gaps = 1/143 (0%)

Query: 495 KEIARNQAFQATLVESEEKYRNLFDKAPVGHVLKRLEDSQFVAINQAFTEITGYTLEELQ 554
           ++I + Q  +A L  SEEK+   F  +P    +   E  +++ +N  F  +TGY  +E+ 
Sbjct: 520 RDITQQQRSEAALKASEEKFAKAFHSSPDAITITERESGRYLEVNDGFCRLTGYRADEVL 579

Query: 555 ALEPWDLTPVRYRASEAEQLERLKQTHRYGPYQKHYRHKDGRLVAVRLNGSLVTAANGEP 614
               +++            L  L+   R    +   R+K G L+ V ++   +T  N   
Sbjct: 580 GHTVFEVGIWAEAKQRTALLAELQLKGRVHHQEMLGRNKRGELLTVEVSVEPIT-LNETD 638

Query: 615 LILFVVEDITEQERTVARVNLLA 637
            +L    D++      A++  LA
Sbjct: 639 CLLLTARDVSLLRNAEAQIRHLA 661



 Score = 36.2 bits (82), Expect = 8e-06
 Identities = 30/139 (21%), Positives = 59/139 (42%), Gaps = 1/139 (0%)

Query: 489 KTMALSKEIARNQAFQATLVESEEKYRNLFDKAPVGHVLKRLEDSQFVAINQAFTEITGY 548
           + + + +EI   +  +  L  SE+++  LF   P   +L R ED      NQ F  + G+
Sbjct: 135 RMIGVIREITHQREREQALRSSEKRFATLFHLCPNMVLLTRQEDGLISEANQYFESLFGW 194

Query: 549 TLEELQALEPWDLTPVRYRASEAEQLERLKQTHRYGPYQKHYRHKDGRLVAVRLNGSLVT 608
            + ++      +L      +  A  +E  K        +  +R  +G++ +  L+   V 
Sbjct: 195 PVHDVIGRTTLELGLWVDPSQRARLVEATKAKGELVSMEVEFRASNGQIHSGILSAQKV- 253

Query: 609 AANGEPLILFVVEDITEQE 627
              G+P +L    D TE++
Sbjct: 254 ELEGQPYLLSTFLDTTERK 272



 Score = 26.6 bits (57), Expect = 0.007
 Identities = 13/46 (28%), Positives = 26/46 (56%), Gaps = 4/46 (8%)

Query: 585 PYQKHYRHK----DGRLVAVRLNGSLVTAANGEPLILFVVEDITEQ 626
           P ++   H+    DG L  + ++GS++   +G P ++ V+ +IT Q
Sbjct: 101 PLEQAMHHRIVWPDGSLHWLEISGSVLPDKHGRPRMIGVIREITHQ 146