Pairwise Alignments

Query, 376 a.a., site-specific recombinase, phage integrase family (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 390 a.a., tyrosine-type recombinase/integrase from Pectobacterium carotovorum WPP14

 Score = 53.9 bits (128), Expect = 7e-12
 Identities = 75/337 (22%), Positives = 140/337 (41%), Gaps = 43/337 (12%)

Query: 37  PSGIRCYYVRFQYQGLRQLHVIGNANDITLDDARL---EARK----------HIDALRYG 83
           P+G + +  R+++ G  ++   G    ++L +AR    EARK          H  A +  
Sbjct: 32  PTGSKSWRFRYRFGGKPKMISFGAYPLVSLAEARKKRDEARKQVLDGINPSEHRKAQKLN 91

Query: 84  VVSEPVPSLTLCAFAEEFFPRYARHWKPSTLLNSQRGFTRHIAPVLGDVPLAALTRQHIE 143
           ++SE   +  +   A E+    +  W      +    F   I P +G   +A +    + 
Sbjct: 92  LMSESENTFEI--IAREWHSMKSARWSTGYASDIMEAFRNDIFPYVGKRAIAEIKPLEL- 148

Query: 144 QWFDGMHASKGMANR--LLPLLSVMMQQAEVYEYR----PAQSNPCKGFKRYKSTHSER- 196
                ++  + M  R  L  +  V  + +EV+ Y      A+ NP        +TH  + 
Sbjct: 149 -----LNVLRKMEKRGALEKMKKVRQRCSEVFRYAIATGRAEINPAADLTSVLTTHKAQH 203

Query: 197 --YLSEEELKRLWLALDSHEKASPVAVMVLRLLILTGCRCNEVCSVKWADYRQGH--WYL 252
             +L  +E+     A++S+   S +  +  +LL+LTG R  E+ S +W+++   H  W +
Sbjct: 204 YPFLKADEIPAFIQAVESYT-GSVLVQIAAKLLMLTGVRTIELRSAEWSEFDLEHAIWEV 262

Query: 253 PD---SKTGAKTVFLSSFARELLSDWPQVS---EHLF-WHQSPSQPFTPACLDRFWRPFR 305
           P     K  +  V LS+ A  LLS    +S   +++F     P++P +   ++R  +   
Sbjct: 263 PAERMKKRRSHLVPLSTQALSLLSQLQTISGNYKYVFPGRNDPNKPMSEGSINRMIKHIG 322

Query: 306 ETIHLNDVRIHDLRHTYASIAVKHNINILTIGRLLGH 342
               L     H  RHT ++I  +   +   I   L H
Sbjct: 323 YEGRLTG---HGFRHTMSTILHEQGYDSAWIEMQLAH 356