Pairwise Alignments

Query, 376 a.a., site-specific recombinase, phage integrase family (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 262 a.a., site-specific integrase from Magnetospirillum magneticum AMB-1

 Score = 75.1 bits (183), Expect = 2e-18
 Identities = 67/242 (27%), Positives = 100/242 (41%), Gaps = 52/242 (21%)

Query: 181 NPCKGFKRYKSTHSERYLSEEELKRLWLALDSHEKASPVAVMVLRLLILTGCRCNEVCSV 240
           N  +G + Y     +RY S  EL R+  A+ +H +    +   +RLLILTG R  EV + 
Sbjct: 17  NVAEGTQMYPEHPRKRYASPAELARVLEAIANHPQQD--SCDAIRLLILTGARKGEVFTA 74

Query: 241 KWADYR--QGHWYLPDSKTGAKTVF---LSSFARELLSDWPQVS-------------EHL 282
           +W D     G W  P + T         LS  A +LL    + +             EH+
Sbjct: 75  RWEDIDLDAGIWSKPSAHTKQNQEHIAPLSGTAIQLLKRRKETAAGQWVFPGRVSSDEHI 134

Query: 283 -----------------FWHQSPS-------------QPFTPACLDRFWRPFRETIHLN- 311
                             W +SPS             +  T   +    +P  E +    
Sbjct: 135 TDVKKTWDACRKAATLALWRESPSIAAIIDGLHADLKRAPTIEEIQAATKPQNEDLPKGS 194

Query: 312 -DVRIHDLRHTYASIAVKHNINILTIGRLLGHALPETTLKYTHLAKRDVQQAANVVSQLI 370
            D+RIHDLRHTYAS+     + +  +G LLGH   +TTL+Y HL    +++A    +  I
Sbjct: 195 LDLRIHDLRHTYASMLASKKVPLQVVGALLGHTQAQTTLRYAHLYDDPLREATEFAATAI 254

Query: 371 AG 372
           +G
Sbjct: 255 SG 256