Pairwise Alignments

Query, 376 a.a., site-specific recombinase, phage integrase family (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 445 a.a., site-specific integrase from Magnetospirillum magneticum AMB-1

 Score = 61.2 bits (147), Expect = 5e-14
 Identities = 83/339 (24%), Positives = 140/339 (41%), Gaps = 27/339 (7%)

Query: 33  MRAYPSGIRCYYVRFQYQGLRQLHVIGNANDITLDDARLEARKHIDALRYGV------VS 86
           +R  PSG + + V+      R  H IG    ++L +AR  A  ++   R G         
Sbjct: 71  LRVSPSGEKVWAVKVTVGAQRVRHTIGAYPAVSLGEARKRAEAYLATARDGASPDELDAR 130

Query: 87  EPVPSLTLCAFAEEFFPRYARHWKPSTLLNSQRGFTRHIAPVLGDVPLAALTRQHIEQWF 146
           +   ++T+     E+        + ST+   +  F  H+   LG   +  + R  +    
Sbjct: 131 QRAETMTVTMAHSEYIEAMRSSLRASTISLKKTMFKTHVEGALGKRLIRTVRRSDVVDVV 190

Query: 147 DGMHASKG---MANRLLPLLSVMMQQAEVYEYRPAQSNPCKGFKR-----YKSTHSERYL 198
            G+ A KG    ANR+   +  +++  E   Y     +  K   R      K     R L
Sbjct: 191 GGVSA-KGFPVQANRVFSEVMALLRWCEQKGYVDGVPSARKKDVRAATGGAKELARRRVL 249

Query: 199 SEEELKRLWLALDSHEKASPVAVMVLRLLILTGCRCNEVCSVKW--ADYRQGHWYLPDS- 255
           SE E+  +W   +       +    LRLL+LTG R +EV  + W   D     W +P S 
Sbjct: 250 SEGEIIAVW---NLTANMGDLTGDFLRLLLLTGQRRDEVRLMVWGEVDMDASLWTIPASR 306

Query: 256 -KTG-AKTVFLSSFARELL-SDWPQ-VSEHLFWHQSPSQPFTPACLDRFWRPFRETIHLN 311
            KTG + TV L   A ++L S W +  + ++   +  ++PF  A      R  +E     
Sbjct: 307 YKTGYSHTVPLPKQAMDILRSRWVEGATGYVLAGRGENKPFNGAA-SAVRRLRKELGGKA 365

Query: 312 DVRIHDLRHTYASIAVKHNINILTIGRLLGHALPETTLK 350
           D  +HD+R T  +   +  I+  T   ++GH +P+  +K
Sbjct: 366 DFTLHDIRRTLRTGLARMGIDETTAEMVIGH-IPQGIVK 403