Pairwise Alignments

Query, 376 a.a., site-specific recombinase, phage integrase family (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 363 a.a., site-specific integrase from Dickeya dianthicola ME23

 Score = 57.4 bits (137), Expect = 6e-13
 Identities = 56/186 (30%), Positives = 87/186 (46%), Gaps = 19/186 (10%)

Query: 181 NPCKGFKRYKSTHSE-RYLSEEELKRLWLALDS-HEKASPVAVMVLRLLILTGCRCNEVC 238
           NP  G   +K    E  +L+  E+KR+   LD+  E A+P  ++V ++ + TG R +E  
Sbjct: 158 NPLSGLPTFKIAQQELAFLAPNEIKRV---LDACAESANPHLLLVTKICLATGARWSEAE 214

Query: 239 SVKWADYRQGHWYLPDSKTGAKTVFLSSFARELLSDWPQVSEHLFWHQSPSQPFTPACLD 298
            +         + +  ++T  K       +REL  + P+ S  LF   SP       C  
Sbjct: 215 GLSGQQVTP--YRITYTRTKGKKNRTVPISRELYDEIPRKSGKLF---SP-------CRK 262

Query: 299 RFWRPFRET-IHLNDVRI-HDLRHTYASIAVKHNINILTIGRLLGHALPETTLKYTHLAK 356
            F R    T I L D +  H LRHT+AS  + +  NIL +  +LGHA  + T+ Y H A 
Sbjct: 263 TFERAINRTGIQLPDGQCTHVLRHTFASHFMMNGGNILVLRDILGHADIKMTMIYAHFAP 322

Query: 357 RDVQQA 362
             ++ A
Sbjct: 323 DHLEDA 328



 Score = 23.9 bits (50), Expect = 0.008
 Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 12/74 (16%)

Query: 186 FKRYKSTHSER--YLSEE-------ELKRLWLALDSHEKASPVAVMVLRLLILTGC---R 233
           F+R+    SE   +L E+       E+  LW +L     A P  +M    +I TG    +
Sbjct: 38  FERFTMEESENKPWLGEKADNRSLREIIDLWFSLYGRTLADPKRMMAKLDIICTGLGNPK 97

Query: 234 CNEVCSVKWADYRQ 247
             E+ +  +A YR+
Sbjct: 98  ARELSAADFAHYRE 111