Pairwise Alignments

Query, 376 a.a., site-specific recombinase, phage integrase family (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 400 a.a., tyrosine-type recombinase/integrase from Dickeya dianthicola 67-19

 Score =  100 bits (250), Expect = 5e-26
 Identities = 90/382 (23%), Positives = 164/382 (42%), Gaps = 15/382 (3%)

Query: 1   MPSIKLQQSMIDNLPTPQKITVFYDKYFPAFFMRAYPSGIRCYYVRFQYQ-GLRQLHVIG 59
           M  IKL +S +D      +     D   P F  +  P+G + + ++++   G R+   +G
Sbjct: 1   MAKIKLTKSAVDAAQPQAQAIELRDTLVPGFLCKITPTGRKVFMLQYRTNAGERRKPALG 60

Query: 60  NANDITLDDARLEARKHIDALRYGV-----VSEPVPSLTLCAFAEEFFPRYARHW-KPST 113
              ++T++ AR  A++ +  +R G       +E   + T+    ++F   Y++   KPST
Sbjct: 61  LFGELTVEQARSLAQEWLAQVRRGGDPAADKAEARQAPTVEELCKKFMEDYSKKRNKPST 120

Query: 114 LLNSQRGFTRHIAPVLGDVPLAALTRQHIEQWFDGMHASKGMANRLLPLLSVMMQQAEVY 173
            +  Q    R I P+LG   +  + R  +    + +   +  AN+   +L  M   AEV+
Sbjct: 121 RVGYQGVMDRCIIPLLGRKKVHDVKRPDVAGLMEKLSYKQTEANKAFSILRKMFNMAEVW 180

Query: 174 EYRPAQSNPCKGFKRYKSTHSERYLSEEELKRLWLALDSHEK---ASPVAVMVLRLLILT 230
            YRP  +NPC+    + +  S   +S++++ +L+  LD  E     + V  + +RL    
Sbjct: 181 GYRPDGTNPCRHVPMFPAGKSTHLISDDDMGKLFRQLDKIEAEGLENYVVPLAIRLQFEF 240

Query: 231 GCRCNEVCSV--KWADYRQGHWYLPDSKTGAKTVFLSSFARELLSDWPQVSEHLFWHQSP 288
             R +E+ ++  +W D        PDSKTG  +  +S  A  LLS  P+   + +   SP
Sbjct: 241 AARRSEIVTLEWEWVDLENRRVVWPDSKTGGMSKPMSEEAYRLLSTAPRHEGNPYVLPSP 300

Query: 289 SQPFTPACLDRF---WRPFRETIHLNDVRIHDLRHTYASIAVKHNINILTIGRLLGHALP 345
                      +   W    +      V  H +RH  A+      I +     L  H   
Sbjct: 301 RHQGKSLTTGEYYGGWCRALKAAGATHVGTHGIRHRSATDIANSGIPVKVGMALTAHKTV 360

Query: 346 ETTLKYTHLAKRDVQQAANVVS 367
              ++Y H     V++AA +V+
Sbjct: 361 VMFMRYVHTEDDPVREAAELVA 382