Pairwise Alignments

Query, 376 a.a., site-specific recombinase, phage integrase family (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 404 a.a., tyrosine-type recombinase/integrase from Dickeya dadantii 3937

 Score = 52.8 bits (125), Expect = 2e-11
 Identities = 68/343 (19%), Positives = 132/343 (38%), Gaps = 45/343 (13%)

Query: 32  FMRAYPSGIRCYYVRFQYQGLRQLHVIGNANDITLDDARLEARKHIDALRYGVVSEPVPS 91
           ++   P+G R + ++++  G  +L  +G    I+L     +AR   D  + G+     P+
Sbjct: 27  YLLVNPNGSRYWRLKYRVDGKEKLLALGVYPAISL----AQARGKRDEAKRGIAGGIDPN 82

Query: 92  L---------------TLCAFAEEFFPRYARHWKPSTLLNSQRGFTRHIAPVLGDVPLAA 136
           +               T    A E+     + W      +    F + + P +G+ P+A 
Sbjct: 83  VARREEKIAREAQIKNTFQDIALEWHASKIKKWSAGYASDIMEAFNKDVFPYIGNKPIAQ 142

Query: 137 LTRQHIEQWFDGMHASKGMANRLLPLLSVMMQQAEVYEYR----PAQSNPC----KGFKR 188
           +    +      M  S+G   +      V  +  EV+ Y      A+ NP        + 
Sbjct: 143 IKPLELLNVLRRME-SRGATEKAK---KVRQRCGEVFRYAIVTGRAEYNPAPDLTSAMQG 198

Query: 189 YKSTHSERYLSEEELKRLWLALDSHEKASPVAVMVLRLLILTGCRCNEVCSVKW--ADYR 246
           ++S+H   +L+ +EL   + AL  +   S + ++  RLLILTG R  E+ +  W   D  
Sbjct: 199 HESSHYP-FLNAQELPEFFHALSEYT-GSKLVLLAARLLILTGVRTGELRAANWQEIDTE 256

Query: 247 QGHWYLPDSKTGAKTVFLSSFARELLSDWPQVSEHLFWH-------QSPSQPFTPACLDR 299
              W +P  +   +       +R+ ++   ++ E    +         P    + A +++
Sbjct: 257 NARWEIPAERMKMRRPHCVPLSRQAIAILDEIREMTGRYPLVFPGRNDPRNTMSEASINQ 316

Query: 300 FWRPFRETIHLNDVRIHDLRHTYASIAVKHNINILTIGRLLGH 342
               F+   +   V  H  RHT ++I  +   N   I   L H
Sbjct: 317 V---FKRIGYAGRVTGHGFRHTMSTILHEQGYNTAWIETQLAH 356