Pairwise Alignments

Query, 376 a.a., site-specific recombinase, phage integrase family (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 411 a.a., tyrosine-type recombinase/integrase from Brevundimonas sp. GW460-12-10-14-LB2

 Score =  141 bits (356), Expect = 3e-38
 Identities = 123/400 (30%), Positives = 186/400 (46%), Gaps = 39/400 (9%)

Query: 5   KLQQSMIDNLPTPQKITVFYDKYFPAFFMRAYPSGIRCYYVRFQYQGL--RQLHVIGNAN 62
           K+ + ++D L +       +D     F +R   S  + Y VR++  G   R LH I    
Sbjct: 9   KITKRLVDALTSEGVRFTLWDTQLKGFGVRVAVSDTKTYVVRYRTIGGADRLLH-IARHG 67

Query: 63  DITLDDARLEARKHIDALR-----YGVVSEPVPSLTLCAFAEEFFPRYARHWKPSTLLNS 117
            +T ++AR  A   +  +       G   E    LT+    + +        K +TL   
Sbjct: 68  VVTAEEARERAAAVLAEVASGGDPQGTKVERREELTMSELCDLYMKEGVTMKKATTLRID 127

Query: 118 QRGFTRHIAPVLGDVPLAALTRQHIEQWF-----------------DGMHASKGMANRLL 160
           +    RHI P LG + +  + R  IE+                    G+HA    A+R +
Sbjct: 128 RIRIARHIKPRLGKMKVTDIGRADIERLMVDVGSGRIRGEATPHTRGGIHA----ASRTV 183

Query: 161 PLLSVMMQQAEVYEYRPAQSNPCKGFKRYKSTHSERYLSEEELKRLWLALDSHEK--ASP 218
            LL  +   A   E+   ++NP +G KRYK    +R+LS  EL RL   L   EK    P
Sbjct: 184 GLLGGIFTFAVEREF--VKTNPTRGVKRYKDNRRDRFLSPAELARLGDVLAELEKHGGDP 241

Query: 219 VAVMVLRLLILTGCRCNEVCSVKWA--DYRQGHWYLPDSKTGAKTVFLSSFARELLSDW- 275
             + ++RLL LTG R NE+  +KW+  D   G   L DSKTGAK + L S A +L+    
Sbjct: 242 RHINIIRLLALTGARKNEIARLKWSEIDRTMGMLRLEDSKTGAKVIRLGSAALKLIEGLL 301

Query: 276 PQVSEHLFW-HQSPSQPFTPACLDRFWRPFRETIHLNDVRIHDLRHTYASIAVKHNINIL 334
              S ++F   + P +P   A LD  W   R+   + D+RIHDLRH++AS  +     + 
Sbjct: 302 SNGSIYVFPDRKDPKRPI--ANLDWAWVGIRKRAGMEDLRIHDLRHSFASAGLAGGEGLQ 359

Query: 335 TIGRLLGHALPETTLKYTHLAKRDVQQAANVVSQLIAGEM 374
            IG+LLGH+   TT +Y HLA   V+ AA+ +S+ +A  +
Sbjct: 360 LIGKLLGHSHVSTTSRYAHLADDPVRAAADRISESVAASL 399