Pairwise Alignments

Query, 256 a.a., transcriptional regulator, DeoR family (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 269 a.a., transcriptional repressor of the aga regulon from Escherichia coli BL21

 Score =  170 bits (431), Expect = 2e-47
 Identities = 105/254 (41%), Positives = 152/254 (59%), Gaps = 10/254 (3%)

Query: 6   TQQRRHSIISILNEQGEVSVDELSLRFETSEVTIRKDLAELEKTGLLLRRYGGAVAIPDE 65
           T +RR  II  L +QG V V++LS  +  S VTIR DLA LEK G+ +R YGGA+ I D 
Sbjct: 15  TSERREQIIQRLRQQGSVQVNDLSALYGVSTVTIRNDLAFLEKQGIAVRAYGGAL-ICDS 73

Query: 66  VT-------QQFSAKIAPNKLSIAKAAAQLIKDHNRIIIDSGTTTSGLIAELNQKRGLVV 118
            T       +  SA     K S+AKAA +LI+  +R+I+DSGTTT  +   + +   ++ 
Sbjct: 74  TTPSVEPSVEDKSALNTAMKRSVAKAAVELIQPGHRVILDSGTTTFEIARLMRKHTDVIA 133

Query: 119 MTNALHLANAIHELENEPTLLMTGGTWDPHSESFQGQVAEQVLRSYNFDQLFIGADGIDL 178
           MTN +++ANA+ E E    LLMTGG     S+SF G  AEQ L++Y+FD LF+G D IDL
Sbjct: 134 MTNGMNVANALLEAEGVE-LLMTGGHLRRQSQSFYGDQAEQSLQNYHFDMLFLGVDAIDL 192

Query: 179 ARGTTTFNE-LTGLSKVMAEVSREVIVMVDSDKIGKRIPNLELPWSKISVLVTDARIEES 237
            RG +T NE    L++ M EV+  +IV+ DS K  +   +  +   +I +++ D  I   
Sbjct: 193 ERGVSTHNEDEARLNRRMCEVAERIIVVTDSSKFNRSSLHKIIDTQRIDMIIVDEGIPAD 252

Query: 238 ALKQITEQGVKVIL 251
           +L+ + + GV+VIL
Sbjct: 253 SLEGLRKAGVEVIL 266