Pairwise Alignments

Query, 764 a.a., sensory box protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 1098 a.a., PAS/PAC/GAF sensor-containing diguanylate cyclase/phosphodiesterase from Pseudomonas putida KT2440

 Score =  171 bits (432), Expect = 3e-46
 Identities = 150/587 (25%), Positives = 262/587 (44%), Gaps = 17/587 (2%)

Query: 182  TSLQQVHERLGRAVKQLNDSEQRWLFAVEGSRNGIWDWDLRTGEVF-LSDRWKEMIGYLP 240
            T+L+ + ++  RA   L  SE+++  A   S + I   +  +G    ++D +  + GY  
Sbjct: 517  TTLRDITQQQ-RAEAALKSSEEKFAKAFHSSPDAITITERHSGRYLEVNDGFCRLTGYST 575

Query: 241  DELEGAFQTWEARLHPDDKQAVLNCLDEYVSGKTKEFESVHRLLHRDGHYVWVFDRGMLV 300
            DE+ G    +E  +  DDKQ      +    G+    E + R    D     +    + V
Sbjct: 576  DEVIG-HTVYEIGIWADDKQRSALLAELRERGRVHHREMLGRNKRGD-----ILTVEVSV 629

Query: 301  DWDHLGRPTRMIGIHVDVSESEKNHAAIAELVKQSASGHRMLPEAFMEQLSQYLSQRNRA 360
            +   L     ++    DVS+ +   A I  L       +       M++LSQ ++   R 
Sbjct: 630  EPITLNEVDCLLLTARDVSQLKNAQAQIRHLAYHDPLTNLPNRALLMDRLSQQIALLKRH 689

Query: 361  GYWGALLFVNVDTHD-ISDSLSTHELERLLSQLGARLSSYFTENIVVAHIEFGNFAFLVK 419
               GALLF+++D    I+DSL     + +L  + ARL +       VA +    F  L+ 
Sbjct: 690  NLRGALLFLDLDHFKHINDSLGHPVGDTVLKIITARLEASVRLEDTVARLGGDEFVVLLS 749

Query: 420  DLAVDAEMAGRRALALATELRQITMRPFHYGEHHFSLVANLGICLLDSVETLAPELVVRR 479
             L    E    +   LA  LR++   P         +  ++G+ L+    T   +L+ +R
Sbjct: 750  GLEGSREHVEEKVRELADTLRELLAEPMSLDGQRLQVTPSIGVALIPDHGTTPADLL-KR 808

Query: 480  AQLAMEHGKSSEHAGCAFYHPDLARALDPEPSLLNALQRAITDNQLSLMFQPVVDVY-GK 538
            A +A+   K S       +H  + +A      + N L+ A+   +L+L FQP VD    +
Sbjct: 809  ADIALYRAKDSGRNTTQLFHTTMQKAASERLRMENDLRLALARGELALHFQPQVDARDNR 868

Query: 539  IESAEVLSRWSLANGEIVPVAQFISLAEQNGLVASLDLNVTERVCQLVKQFRQLGITLP- 597
            I  AEVL RW        P +QFI + E++GL+  +   + +  C    +    G+    
Sbjct: 869  IVGAEVLLRWHHPQLGQQPPSQFIQVLEESGLILEVGSWILDEACDACARMLTDGLIDAD 928

Query: 598  --RLTLNISTLSFCQADFIEQFIAVVRSYELDDKQLGVELAESVFLTSKAFVEPRIIQLV 655
               L +NIS   F Q DF+ + +  +  Y L  + L +E+ E + + +      ++ +L 
Sbjct: 929  DFNLCVNISPRQFRQNDFVGRVLRSLDDYRLPRQMLTLEITEGIVIQNLEDTISKMCELK 988

Query: 656  EAGIAITLDNFGAGQSALSCLHNYPLTEVKLD---VHCAVSLLNDASWNQALIQAVQPFK 712
              G++  +D+FG G S+L+ L   P+  +K+D   V  A    NDA   +A++   +   
Sbjct: 989  RYGVSFAMDDFGTGYSSLTYLKRLPVDALKIDQSFVRDAPVDPNDAEIVRAIVAMARSLD 1048

Query: 713  LPIVAKGVESVQQQQLFTTLGCTHFQGYNIARALSLNDFKQLVCPRP 759
            L ++A+GVE  +Q      LGC  +QGY  +R L L +F+Q++   P
Sbjct: 1049 LAVIAEGVELTEQLAFLERLGCHLYQGYLHSRPLPLPEFRQMLLEAP 1095



 Score = 54.3 bits (129), Expect = 3e-11
 Identities = 41/154 (26%), Positives = 67/154 (43%), Gaps = 8/154 (5%)

Query: 200 DSEQRW------LFAVEGSRNGIWDWDLRTGEVFLSDRWKEMIGYLPDELEGAFQTWEAR 253
           +SEQ W      L A+ G+  G W WD+ +G V  S   + + G+ P     A   +   
Sbjct: 21  ESEQAWQNAPQLLAALNGAHLGAWLWDIESGRVSWSRGTQALFGFDPQRPLPADIDYLDL 80

Query: 254 LHPDDKQAVLNCLDEYVSGKTKEFESVHRLLHRDGHYVWVFDRGMLVDWDHLGRPTRMIG 313
           L  +D+          V+G+  E    HR+   DG   W+   G L    H GRP +MIG
Sbjct: 81  LPEEDRARTRQVFQAVVNGEPVEQAMRHRIRWPDGSLHWLEINGSLTHDPH-GRP-QMIG 138

Query: 314 IHVDVSESEKNHAAIAELVKQSASGHRMLPEAFM 347
           +  +++   +   A+    K+ A+   + P A +
Sbjct: 139 VIREITRQRERETALINSEKRFATLFHLSPNAIL 172



 Score = 49.7 bits (117), Expect = 8e-10
 Identities = 32/152 (21%), Positives = 71/152 (46%), Gaps = 1/152 (0%)

Query: 193 RAVKQLNDSEQRWLFAVEGSRNGIWDWDLRTGEVFLSDRWKEMIGYLPDELEGAFQTWEA 252
           RA + L DS++R   A++ ++ G WDW + +G ++ S R  ++ G  P     +F  +  
Sbjct: 273 RAEQALKDSQERLDLALDSAQLGTWDWHIPSGMLYGSARAAQLHGLPPIPFHESFDAFFE 332

Query: 253 RLHPDDKQAVLNCLDEYVSGKTKEFESVHRLLHRDGHYVWVFDRGMLVDWDHLGRPTRMI 312
            +   ++ ++         G    ++  +R+   +G   ++  R  L   D  G P RM 
Sbjct: 333 GVPEHERNSMRQAYRSLREGPAGNYQITYRVQLENGTSRYIESRARLYR-DDQGIPLRMA 391

Query: 313 GIHVDVSESEKNHAAIAELVKQSASGHRMLPE 344
           G  +D+++  +    ++   ++ AS  ++ P+
Sbjct: 392 GTLLDITDQVEREQRLSASEEKFASLFQVSPD 423