Pairwise Alignments

Query, 764 a.a., sensory box protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 994 a.a., diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  191 bits (484), Expect = 2e-52
 Identities = 150/572 (26%), Positives = 268/572 (46%), Gaps = 21/572 (3%)

Query: 191 LGRAVKQLNDSEQRWLFAVEGSRNGIWDWDLRTGEVFLSDRWKEMIGYLPDELEGAFQTW 250
           L  +V +LND     + A+  +  G  D + R   VF++D +++  GY   E+ G     
Sbjct: 426 LETSVSRLND-----IVAIAETGAGSDDQEPRI--VFVNDAFEQHTGYSRAEVLGQTPRM 478

Query: 251 EARLHPDDKQAVLNCLDEYVSG--KTKEFESVHRLLHRDGHYVWVFDRGMLVDWDHLGRP 308
              L P      +  L E   G  +T++  +   +  ++G   WV    + V        
Sbjct: 479 LLELDP-----AIPKLRELAQGLQQTRQARTELMVRRKNGAMFWVELEVVSVQAT-AEEV 532

Query: 309 TRMIGIHVDVSESEKNHAAIAELVKQSASGHRMLPEAFMEQLSQYLSQRNRAGYWGALLF 368
           T  + +  D+++ +     I  L    A       +  +++L Q L+   R+G  GAL+F
Sbjct: 533 THWVAVGRDITQRKTAEDMIRHLAFYDALTDLPNRQLLLDRLQQALAASARSGQHGALMF 592

Query: 369 VNVDTHDI-SDSLSTHELERLLSQLGARLSSYFTENIVVAHIEFGNFAFLVKDLAVDAEM 427
           +++D   I +D+L  H  ++LL ++ ARL+    +  +VA +    F  +V DL+ D + 
Sbjct: 593 IDLDNFKILNDTLGHHMGDQLLQKVAARLTRSVRKTDMVARLGGDEFVVMVDDLSTDPDA 652

Query: 428 AGRRALALATELRQITMRPFHYGEHHFSLVANLGICLLDSVETLAPELVVRRAQLAMEHG 487
           A  +A ALA ++      PF    H      ++G+   +  ++   EL+ ++A LAM   
Sbjct: 653 AAFKATALAEKVLNTLREPFQLTGHQHFATPSIGVTSFNGQQSDVGELL-KQADLAMYQA 711

Query: 488 KSSEHAGCAFYHPDLARALDPEPSLLNALQRAITDNQLSLMFQPVVDVYGKIESAEVLSR 547
           KS       F+ P++A  +    ++ + L+ A+++ Q  + +QP VD  G I   E L R
Sbjct: 712 KSLGRNTLCFFDPNMAATVSANATVSSDLRVALSEQQFVVHYQPQVDRVGVITGVEALVR 771

Query: 548 WSLANGEIVPVAQFISLAEQNGLVASLDLNVTERVCQLVKQFRQLGITLP-RLTLNISTL 606
           W      ++  A FI +AE  GL+  L   V E+ C+ +  +     T    + +N+S  
Sbjct: 772 WQHPQRGLIFPADFIPVAEDTGLILPLGQWVLEKSCEQLAAWADRPQTANLSIAVNVSVR 831

Query: 607 SFCQADFIEQFIAVVRSYELDDKQLGVELAESVFLTSKAFVEPRIIQLVEAGIAITLDNF 666
            F   DF++  +A +    +   +L +EL ES+          ++  L   G+ ++LD+F
Sbjct: 832 QFRHPDFVDMVMAAITRTGIRPHKLKLELTESLLADRMEITIDKMGMLKALGVTLSLDDF 891

Query: 667 GAGQSALSCLHNYPLTEVKLDVHCAVSLL---NDASWNQALIQAVQPFKLPIVAKGVESV 723
           G G S+LS L   PL ++K+D      +L   NDA+ ++A+I   Q   L +VA+GVE+ 
Sbjct: 892 GVGYSSLSVLKRLPLDQLKIDKGFVADVLTDPNDAAISRAIIALAQSLSLQVVAEGVETQ 951

Query: 724 QQQQLFTTLGCTHFQGYNIARALSLNDFKQLV 755
           +Q+      GC  FQG+  A+ L +     L+
Sbjct: 952 EQRDFLAYQGCDQFQGHLFAKPLPIEALDALL 983



 Score = 30.4 bits (67), Expect = 5e-04
 Identities = 41/190 (21%), Positives = 73/190 (38%), Gaps = 12/190 (6%)

Query: 161 VGTPEFTIQVPWSAAEVLSLQTSLQQVHERLGRAVKQLNDSEQRWLFAVEGSRNGIWDWD 220
           +G P   + +   AA+VL+L    +Q  +        L +SE R       +  G W   
Sbjct: 145 IGAPTLQL-LAQHAADVLALARRCEQSEQYNANV---LRESESRLNLTEHTAGAGSWSLQ 200

Query: 221 LRTGEVFLSDRWKEMIGYLPDELEGAFQTWEARLHPDDKQAVLNCLD---EYVSGKTKEF 277
           L T EV  SD +  ++G          +    R  P+ +  +   L+   +Y  G    F
Sbjct: 201 LSTREVVHSDEFATILGLADHRQVRNLEDMVQRYSPEWRNGIRQRLERCAQYGEG----F 256

Query: 278 ESVHRLLHRDGHYVWVFDRGMLVDWDHLGRPTRMIGIHVDVSESEKNHAAIAELVKQSAS 337
           +   +++   G   WV   G  V   + G+  R+ G   D+S  ++       L  +  +
Sbjct: 257 DEEIQVMVEGGAPKWVRTVGTAVRRAN-GQIVRIQGAIQDISAQKQAQQDTLRLAMRLTT 315

Query: 338 GHRMLPEAFM 347
               + EAF+
Sbjct: 316 TLASITEAFV 325