Pairwise Alignments

Query, 764 a.a., sensory box protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 870 a.a., PAS domain S-box/diguanylate cyclase (GGDEF) domain from Kangiella aquimarina DSM 16071

 Score =  153 bits (387), Expect = 3e-41
 Identities = 128/558 (22%), Positives = 260/558 (46%), Gaps = 26/558 (4%)

Query: 208 AVEGSRNGIWDWDLRTGE---VFLSDRWKEMIGYLPDELEGAFQTWEARLHPDDKQAVLN 264
           +VE S +G+   D R  +   ++ +  ++E+ GY  +++ G  +       PD  Q    
Sbjct: 325 SVESSTHGLLISDARADDYPTIYANQAFEEITGYSQEDILG--KNCRMLQGPDTDQKTRK 382

Query: 265 CLDEYVSGKTKEFESVHRLLHRDGHYVWVFDRGMLVD--WDHLGRPTRMIGIHVDVSESE 322
            + + +    +E  +V +   +DG   W     +L+    D  G+ T  IG+  D++E  
Sbjct: 383 AIKKALQNN-EEISTVIKNYKKDGTPFW---NELLISPVKDAHGKVTHFIGLQNDITERI 438

Query: 323 KNHAAIAELVKQSASGHRMLPEAFMEQLSQYLSQRNRAGYWGALLFVNVDTHD-ISDSLS 381
           +   A+          H     A    L +++   + + +   +LF+++D    I+DSL 
Sbjct: 439 QRQEALEFNASHDPLTHLKNRSALERYLMEWVKSNDNS-HNIYILFIDLDGFKPINDSLG 497

Query: 382 THELERLLSQLGARLSSYFTENIVVAHIEFGNFAFLVKDLAVDAEMAGRRALALATELRQ 441
               +++L +   RL++   E  ++A      F  +++DL    ++       LA +L  
Sbjct: 498 HEFGDQVLVETAQRLNNEIVEPNMLARFGGDEFVAVIQDLTDHEQVE-----VLARKLLT 552

Query: 442 ITMRPFHYGEHHFSLVANLGICLLDSVETLA-PELVVRRAQLAMEHGKSSEHAGCAFYHP 500
           I    +   +   SL A +GI    S E+   P  +++RA +AM   K    +   ++  
Sbjct: 553 IVGESYKVDDIEVSLSAAIGIA--SSEESFKHPMELIQRADIAMYEAKKRGGSYIYWHSA 610

Query: 501 DLARALDPEPSLLNALQRAITDNQLSLMFQPVVDVYGKIESAEVLSRWSLANGEIVPVAQ 560
           +L   +D + ++   LQ AI +NQ  L +QP++    KI   E L RW       +  A+
Sbjct: 611 ELNTNIDQQVAIRAQLQDAIQNNQFELFYQPIMSHDNKIGGVEALIRWKHPIKGYISPAE 670

Query: 561 FISLAEQNGLVASLDLNVTERVCQLVKQFRQLGITLPRLTLNISTLSFCQADFIEQFIAV 620
           FI +AE+ G +  +   V  + C+ VK  + LG+    +++N S + F + DFIE+    
Sbjct: 671 FIPVAERTGQIIPISEWVLNQACKDVKDLKTLGVN--SVSVNFSPIQFYREDFIEKIAET 728

Query: 621 VRSYELDDKQLGVELAESVFLTSKAFVEPRIIQLVEAGIAITLDNFGAGQSALSCLHNYP 680
           ++++ +    + VE+ E+V +   A +   + +L   G+ + +D+FG+G ++L  L+  P
Sbjct: 729 LKTHSIQPGDITVEITENVLVHDTAHITVLLQELRHLGLDVAIDDFGSGFASLRYLNMLP 788

Query: 681 LTEVKLDVHCAVSL---LNDASWNQALIQAVQPFKLPIVAKGVESVQQQQLFTTLGCTHF 737
           + ++K+D     ++    ++A+  + ++      K+ +VA+GVE+ ++ Q      C   
Sbjct: 789 VNKLKIDRSFTGNIHQNAHNAAITRGILGMTTEMKIEVVAEGVETDEEYQYLREHKCDFM 848

Query: 738 QGYNIARALSLNDFKQLV 755
           QGY   R + + +  + V
Sbjct: 849 QGYLFCRPIPIKELIEWV 866