Pairwise Alignments

Query, 709 a.a., sensor histidine kinase (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 589 a.a., histidine kinase from Pseudomonas simiae WCS417

 Score =  128 bits (321), Expect = 9e-34
 Identities = 112/400 (28%), Positives = 182/400 (45%), Gaps = 73/400 (18%)

Query: 310 YAPLEDIRGQRVGMIYTGFSESPFIHNYLLNIIELGTILMLVLLIS-------GLLVYRG 362
           Y P+ +  G   G+I++G       H  L+ ++    + +L+ L+S       G+LV R 
Sbjct: 247 YWPIFNDAGDLQGVIFSGLLR----HTSLVGLVNQSNLFVLIFLLSSALSLAAGVLVSR- 301

Query: 363 AYSLLQPIERIHHVVQAVQSGRNV-RIGALGLDRDNELSNLAEQFDRMLDLLQRRNAQIQ 421
              L +P+  +   V AV SG    R+   G D   EL+ L+  F+ M + L        
Sbjct: 302 --RLTKPLRDLSQGVSAVISGDYAHRVVVSGGD---ELAQLSSTFNHMTERLGE------ 350

Query: 422 AAAEQLEMKVEERTRSLQDKTLELQRNVALLNETRQQLVTNEKLTALGELTAGIAHEINN 481
                                         L+    QL   ++L ALGE+  G+AHEI N
Sbjct: 351 ------------------------------LHHLEAQLRRRDRLHALGEVAMGLAHEIRN 380

Query: 482 PTAVILGNMELLRYELGDKAEVVKEEIDLVIQQVGRISTIIRSLLQYSRPGEFNAPLE-M 540
           P  +I    +LL +   D A+  K  ++ VI +V RI+ +I   L +++P   N PL  +
Sbjct: 381 PLGIIKTATQLL-HRRADLADTDKRHLEYVISEVSRINDLITEFLDFAKP---NPPLRVL 436

Query: 541 HPITPIIEEML-----VLVRHSIQKQEVVLITELNASCPVQVNRPQLLQVLINLVVNAAH 595
            P  P++EE+L      L  H+I  Q    I +      +  +  QL Q  +NL++NA  
Sbjct: 437 LPARPLVEEILGFCAPELATHTIDAQ----IDDQAPGATIYADAKQLKQACLNLILNAID 492

Query: 596 AMDGKGRIWVRTYDWVQQDIAIGVKIEVEDEGSGIEPEQLGRIFDPFYTTRKDGTGLGLS 655
           AM   GR+ +     ++ D      I + D G GI  + + RIF PF TT+  GTGLGL+
Sbjct: 493 AMPEGGRLTLG----IRAD-GENTVISIADTGQGIPADMIERIFTPFVTTKASGTGLGLA 547

Query: 656 LSYGIIKRIGGTIEVSSVLGKGSIFTIGLYHEAKEDHQNN 695
             Y I++   G+IE +S    G+ F++ +    ++D  ++
Sbjct: 548 KVYSIMESHDGSIECASEKDAGATFSLYIPASGEDDEDSH 587