Pairwise Alignments

Query, 709 a.a., sensor histidine kinase (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 465 a.a., Sensor protein of zinc sigma-54-dependent two-component system from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  128 bits (321), Expect = 7e-34
 Identities = 87/232 (37%), Positives = 127/232 (54%), Gaps = 26/232 (11%)

Query: 463 EKLTALGELTAGIAHEINNPTAVILGNMELLRY---------ELGDKAEVVKEEIDLVIQ 513
           EKL A+G L AG+AHEI NP + I G   L +Y         E  + A+V+ +E D    
Sbjct: 242 EKLVAMGHLAAGVAHEIRNPLSSIKG---LAKYFAERTPAGGESHELAQVMAKEAD---- 294

Query: 514 QVGRISTIIRSLLQYSRPGEFNAPLEMHPITPIIEEMLVLVRHSIQKQEVVLITELNASC 573
              R++ ++  LL+  +P      L+   +  II   L LV    Q +E+ L    N + 
Sbjct: 295 ---RLNRVVSELLELVKPAHLT--LQTVNLNDIITHSLNLVSQDAQSREIQLRFTANETL 349

Query: 574 P-VQVNRPQLLQVLINLVVNAAHAMDGKGRIWVRTYDWVQQDIAIGVKIEVEDEGSGIEP 632
             +Q +  +L QVL+NL +NA HA+  +G I V      ++     V I V D G GI P
Sbjct: 350 KRIQADPDRLTQVLLNLYLNAIHAIGRQGTISVEA----KESGTDRVIITVTDSGKGIAP 405

Query: 633 EQLGRIFDPFYTTRKDGTGLGLSLSYGIIKRIGGTIEVSSVLGKGSIFTIGL 684
           +QL  IF P++TT+ DGTGLGL++   II++ GG I+V S+ GKG++FTI L
Sbjct: 406 DQLEAIFTPYFTTKADGTGLGLAVVQNIIEQHGGAIKVKSIEGKGAVFTIWL 457