Pairwise Alignments

Query, 219 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 212 a.a., hypothetical protein from Agrobacterium fabrum C58

 Score =  120 bits (302), Expect = 1e-32
 Identities = 87/221 (39%), Positives = 119/221 (53%), Gaps = 47/221 (21%)

Query: 11  RALLLLVGFHILIICVSNYLVQLPFQ--LFGYHT----TWGAFSFPFVYLATDLTVRIFG 64
           R  ++ V    L++  SN LVQ P    LFG +     TWGAF++P  +L TDLT R FG
Sbjct: 5   RFTIIYVLLMTLVVVASNILVQYPLSGSLFGINLGDLLTWGAFTYPVAFLVTDLTNRQFG 64

Query: 65  QTPARSIILKAMVPALMISYVMGVVFHQGSFQGIDSLSQWNTFVFRIAFASFAAYLIGQL 124
            + AR ++L          +++GV           +LS W T + RIA AS  AYLIGQL
Sbjct: 65  PSVARRVVLAG--------FIVGV-----------TLSFW-TSIPRIAVASGTAYLIGQL 104

Query: 125 MDITVFARLRQSRSWWVAPAASTIVGNLVDTLVFFSVAFYAS------TDSFM------- 171
           +DI+VF RLR+ R WW AP A +++G+++DT +FFS+AF AS       D+F        
Sbjct: 105 LDISVFNRLRRQR-WWHAPLAGSMLGSVLDTALFFSIAFAASFSFVGPNDAFAIESAPLL 163

Query: 172 ------ATNWPEIAAVDYSFKLLVSLGLFLPAYGVLLKVLQ 206
                 A  W   A  D S K+LV L + LP YG L+  L+
Sbjct: 164 GVFALEAPRWISWALGDLSVKVLVGLVMLLP-YGALMNTLK 203