Pairwise Alignments

Query, 464 a.a., ABC transporter, ATP-binding protein, putative (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 510 a.a., sugar ABC transporter ATP-binding protein from Paraburkholderia sabiae LMG 24235

 Score = 97.4 bits (241), Expect = 1e-24
 Identities = 111/461 (24%), Positives = 188/461 (40%), Gaps = 52/461 (11%)

Query: 3   LLELEGVSFNYGSQLPLVFQEITLTIGRGQCHCVSGPTGSGKSSLINLLAGAQNRPHEGD 62
           LL L GV   +   + L    I L +  G+ H V G  G+GKS+L+ +++G Q R  EG 
Sbjct: 17  LLRLRGVGKRFPGVVAL--DGIDLDLRAGEVHAVCGENGAGKSTLMKIISG-QYRADEGT 73

Query: 63  IWRHPQLVTGLVMQDPQTQ----LHRQTVGAEVVFSLENLGIPAE----------SMLPK 108
           +      V      + Q      +H++      +   EN+ +  E          ++   
Sbjct: 74  VCYRGAPVQFASTSEAQAAGIAIIHQELNLVPHLSVAENIYLAREPKRGPFVDYRTLNAN 133

Query: 109 VQHALRRVGLFLRLDTPVSTLSLGQKYRLMIAAQLVCEPDLLLLDEPWAQLDDHGVSELL 168
            +  L+R+GL +   T V  LS+ Q+  + IA  L  +  +L++DEP + L +    +L 
Sbjct: 134 ARQCLQRIGLNVSPVTLVGALSIAQQQMVEIAKALSLDARVLIMDEPTSSLTESETVQLF 193

Query: 169 VVLRNLINEGMALVLVEHNATAFAEIIQYYWQLEDG-HLSAGLHQTPEILPVIAPAWRTA 227
            ++R L  +G+A++ + H     AEI+     L DG H++     +  I  ++A      
Sbjct: 194 RIIRELRADGVAILYISHRLDEMAEIVDRVTVLRDGRHIATSDFASTSINEIVA------ 247

Query: 228 SKCEPFGKVLVQAEPFEFSFDSGHLLFTC----------PNGFKLYAGEIVTLIGDNGSG 277
                 G+ L  A P   S  +G LL             P  F+L  GEI+   G  G+G
Sbjct: 248 ---RMVGRPLDDAYPPRQSTPTGELLLRVRDLQRTGTFGPVSFELRKGEILGFAGLMGAG 304

Query: 278 KTSLLKTLAGA------LSLKQRLPLKVLGRRPKLGVYGAEL-------GLLMQRP-SRQ 323
           +T + + + GA        L    P+ +   R  +    A L       GL +  P S  
Sbjct: 305 RTEVARAIFGADRPDSGSILLGDTPVSIGSPREAIRHGIAYLSEDRKKDGLALSMPVSAN 364

Query: 324 LFETTVLAEMQFSLKRFELPCERAAQLLEELDLNH-LAELPPHQLSYGQQHLIALASLAC 382
           +    V A       RF      A + + EL +           LS G Q  I ++    
Sbjct: 365 ITLANVRAISSRGFLRFSEEAAVAGRYVRELGIRTPTVRQIAKNLSGGNQQKIVISKWLY 424

Query: 383 MRPKVLLLDDPLAGMDKHYSSKVWYLLQKLTAQGCAILLTS 423
              ++L  D+P  G+D      ++ L+ +L + G  ++L S
Sbjct: 425 RGSRILFFDEPTRGIDVGAKYAIYGLMDRLASDGVGVVLIS 465



 Score = 53.9 bits (128), Expect = 1e-11
 Identities = 43/176 (24%), Positives = 83/176 (47%), Gaps = 15/176 (8%)

Query: 262 LYAGEIVTLIGDNGSGKTSLLKTLAGALSLKQRL------PLKVLG----RRPKLGVYGA 311
           L AGE+  + G+NG+GK++L+K ++G     +        P++       +   + +   
Sbjct: 40  LRAGEVHAVCGENGAGKSTLMKIISGQYRADEGTVCYRGAPVQFASTSEAQAAGIAIIHQ 99

Query: 312 ELGLLMQRPSRQLFETTVLAE--MQFSLKRFELPCERAAQLLEELDLNHLAELPPHQLSY 369
           EL L+   P   + E   LA    +     +      A Q L+ + LN         LS 
Sbjct: 100 ELNLV---PHLSVAENIYLAREPKRGPFVDYRTLNANARQCLQRIGLNVSPVTLVGALSI 156

Query: 370 GQQHLIALASLACMRPKVLLLDDPLAGMDKHYSSKVWYLLQKLTAQGCAILLTSHR 425
            QQ ++ +A    +  +VL++D+P + + +  + +++ ++++L A G AIL  SHR
Sbjct: 157 AQQQMVEIAKALSLDARVLIMDEPTSSLTESETVQLFRIIRELRADGVAILYISHR 212



 Score = 25.4 bits (54), Expect = 0.005
 Identities = 17/82 (20%), Positives = 36/82 (43%)

Query: 129 LSLGQKYRLMIAAQLVCEPDLLLLDEPWAQLDDHGVSELLVVLRNLINEGMALVLVEHNA 188
           LS G + +++I+  L     +L  DEP   +D      +  ++  L ++G+ +VL+    
Sbjct: 409 LSGGNQQKIVISKWLYRGSRILFFDEPTRGIDVGAKYAIYGLMDRLASDGVGVVLISSEL 468

Query: 189 TAFAEIIQYYWQLEDGHLSAGL 210
                +        +G ++A L
Sbjct: 469 PELLGMTDRIAVFHEGRITAVL 490