Pairwise Alignments

Query, 382 a.a., multidrug resistance protein, AcrA/AcrE family (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 394 a.a., hemolysin D from Pseudomonas simiae WCS417

 Score =  319 bits (818), Expect = 7e-92
 Identities = 173/336 (51%), Positives = 233/336 (69%), Gaps = 3/336 (0%)

Query: 38  EVGVIKVEAKPQVIKIELPGRSKAFLEAEVRPQVNGIITKRSFVEGGNVKQGESLYQIDS 97
           +V VI ++ + QV+  EL GR++AF+ A++RPQV GI+ +R FVEG +VK G++LYQ+D+
Sbjct: 41  KVSVISIKPQSQVLTTELAGRTQAFMVAQIRPQVGGIVQRRLFVEGADVKVGQALYQLDA 100

Query: 98  ATYKAALVSANADLARANASLASAKAKAARYQQLVKTNAISKQDFDEADAAYKEALASVT 157
           A+Y AAL  A A LA+  A+L SA+A A R  +LVK NAIS+QD ++A A    A A V 
Sbjct: 101 ASYTAALAQAEASLAKYRATLKSAQATARRDAELVKINAISQQDNEDAQATLLTAAADVQ 160

Query: 158 VAEAAINTAKINLEYTEVLAPISGRIGKSSVTAGALVTANQSQTLATIQQLDPINVDIAQ 217
            AEA + TA+INL YT + +P+ GRI  S+VT GALV ANQ   L T+QQLDPI VD+ Q
Sbjct: 161 GAEADVQTARINLAYTRITSPVGGRIETSTVTPGALVVANQDSALTTVQQLDPIYVDVTQ 220

Query: 218 SSAQLLRLKAKLKQGKLLAADN--ADVQLVLVDGTVYGHTGKLQFAEVSVDQNTGSVILR 275
           S+ +LL+LK  L  G L +  +  A V L L DG+ Y   G+L+ + VSV++ TG+V LR
Sbjct: 221 STTELLKLKRDLASGALQSNGDGQARVSLKLDDGSAYNQQGRLKVSGVSVNEGTGTVTLR 280

Query: 276 AEFPNPDGVLLPGMYVRAMLNAGTDPQAILVPQKAITRNAKGEAVAMVVNAQGQVEAKIV 335
           AEF NPD +LLPGMYVRA+L    + QAILVPQKA+ R+A G   A++V   G+VE + +
Sbjct: 281 AEFANPDHLLLPGMYVRAVLEQARNEQAILVPQKAVNRSASGVTTALLV-VDGKVEQREL 339

Query: 336 TTAEVINHQWRVTSGLAVGDQVIVEGLQKIRPGAPV 371
           T    + +QW VT+GL  GDQ+IVEG QK+R GA V
Sbjct: 340 TIDRAVGNQWWVTAGLQAGDQLIVEGGQKVRAGAAV 375