Pairwise Alignments

Query, 382 a.a., multidrug resistance protein, AcrA/AcrE family (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 386 a.a., Secretion protein HlyD from Pseudomonas syringae pv. syringae B728a ΔmexB

 Score =  341 bits (875), Expect = 2e-98
 Identities = 194/378 (51%), Positives = 256/378 (67%), Gaps = 22/378 (5%)

Query: 7   LASVISVALWMAACSPQEDKAAHGGAGPQSMEVGVIKVEAKPQVIKIELPGRSKAFLEAE 66
           L + I++A  ++ CS +E  A       Q+ +VGV+ ++A+P  +  ELPGR+ AF  AE
Sbjct: 10  LVTAIALATLLSGCSKKEQAAPPA----QTPQVGVVTIKAQPYTLTTELPGRTTAFRVAE 65

Query: 67  VRPQVNGIITKRSFVEGGNVKQGESLYQIDSATYKAALVSANADLARANASLASAKAKAA 126
           VRPQVNGII KR F EGG+VK G+ LYQID A Y+A   +AN+    A A+L SAK+ + 
Sbjct: 66  VRPQVNGIILKRLFTEGGDVKAGQQLYQIDPAVYEA---NANS----AKATLQSAKSMSD 118

Query: 127 RYQQLVKTNAISKQDFDEADAAYKEALASVTVAEAAINTAKINLEYTEVLAPISGRIGKS 186
           RY+QLV   A+S+Q++D A       LAS   A+AA+ TA+INL YT+VLAPISGRIG+S
Sbjct: 119 RYKQLVSEQAVSRQEYDTA-------LASTQEAQAALQTAQINLRYTKVLAPISGRIGRS 171

Query: 187 SVTAGALVTANQSQTLATIQQLDPINVDIAQSSAQLLRLKAKLKQGKLL-AADNA-DVQL 244
           +VT GALV++ Q+  +ATIQQLDPI VD+ QSSA +L+L++ L  GKL  A DNA  V+L
Sbjct: 172 AVTEGALVSSAQTDAMATIQQLDPIYVDVVQSSADMLKLRSDLDSGKLQKAGDNAAKVKL 231

Query: 245 VLVDGTVYGHTGKLQFAEVSVDQNTGSVILRAEFPNPDGVLLPGMYVRAMLNAGTDPQAI 304
            L D +VY   GKL+F+EVSVDQ TGSV LRA FPNP+  LLPGM+V A L AG + +AI
Sbjct: 232 TLEDNSVYAQEGKLEFSEVSVDQTTGSVTLRAVFPNPEHRLLPGMFVHAQLQAGVNSKAI 291

Query: 305 LVPQKAITRNAKGEAVAMVVNAQGQVEAKIVTTAEVINHQWRVTSGLAVGDQVIVEGLQK 364
           L PQ+ +TR+ KG   AMVVN   +VE + +     +   W +  GL  GD+VI EGLQ 
Sbjct: 292 LAPQQGVTRDLKGTPTAMVVNQDNKVEMRTLVANRTVGSDWLIEDGLKEGDRVITEGLQY 351

Query: 365 IRPGAPVIPKVISATQAQ 382
           ++PGA V  KV  AT  +
Sbjct: 352 VKPGAEV--KVAEATNVK 367