Pairwise Alignments

Query, 382 a.a., multidrug resistance protein, AcrA/AcrE family (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 385 a.a., putative efflux pump periplasmic linker TtgA from Pseudomonas sp. RS175

 Score =  327 bits (839), Expect = 3e-94
 Identities = 186/367 (50%), Positives = 244/367 (66%), Gaps = 21/367 (5%)

Query: 7   LASVISVALWMAACSPQEDKAAHGGAGPQSMEVGVIKVEAKPQVIKIELPGRSKAFLEAE 66
           L + I++A  ++ C  +E  AA     PQ   VGV+ ++ +P  +  ELPGR+ AF  AE
Sbjct: 10  LVTAIALASLLSGCKKEE--AAPAAPPPQ---VGVVTLKTQPFTLTSELPGRTSAFRVAE 64

Query: 67  VRPQVNGIITKRSFVEGGNVKQGESLYQIDSATYKAALVSANADLARANASLASAKAKAA 126
           VRPQVNGII KR F EG +VK G+ LYQID A Y+A L SA A+L        S K+ A 
Sbjct: 65  VRPQVNGIILKRLFKEGADVKAGQQLYQIDPAVYEATLKSAEANLR-------STKSIAD 117

Query: 127 RYQQLVKTNAISKQDFDEADAAYKEALASVTVAEAAINTAKINLEYTEVLAPISGRIGKS 186
           RY+QLV   A+S+Q++D A A   E+       EA + TA+IN+ YT+V APISGRIG+S
Sbjct: 118 RYKQLVDEQAVSRQEYDTAVANRLES-------EANLQTAQINVRYTKVYAPISGRIGRS 170

Query: 187 SVTAGALVTANQSQTLATIQQLDPINVDIAQSSAQLLRLKAKLKQGKLL-AADNA-DVQL 244
           SVT GALV+  Q++ +ATIQQLDPI VD+ QSS +LL+L+ +L+ G+L  A DNA  V+L
Sbjct: 171 SVTEGALVSNGQTEAMATIQQLDPIYVDVTQSSVELLQLRRELESGRLQKAGDNAATVKL 230

Query: 245 VLVDGTVYGHTGKLQFAEVSVDQNTGSVILRAEFPNPDGVLLPGMYVRAMLNAGTDPQAI 304
           +L DG+ Y H GKL+F+EVSVDQ TGSV LRA FPNPD  LLPGM+V A L AG +  AI
Sbjct: 231 ILEDGSQYAHEGKLEFSEVSVDQTTGSVTLRAVFPNPDHTLLPGMFVHAQLQAGVNSAAI 290

Query: 305 LVPQKAITRNAKGEAVAMVVNAQGQVEAKIVTTAEVINHQWRVTSGLAVGDQVIVEGLQK 364
           L PQ+ +TR+ KG   A+VV    +VE + +  +  +  QW +  GL  GD+VI EGLQ 
Sbjct: 291 LAPQQGVTRDLKGMPTALVVGPDNKVELRQLKASRTVGSQWLIEDGLKAGDRVITEGLQY 350

Query: 365 IRPGAPV 371
           +RPG  V
Sbjct: 351 VRPGVEV 357