Pairwise Alignments

Query, 382 a.a., multidrug resistance protein, AcrA/AcrE family (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 397 a.a., efflux RND transporter periplasmic adaptor subunit from Pectobacterium carotovorum WPP14

 Score =  344 bits (882), Expect = 3e-99
 Identities = 183/374 (48%), Positives = 257/374 (68%), Gaps = 3/374 (0%)

Query: 10  VISVALWMAACSPQEDKAAHGGAGPQSMEVGVIKVEAKPQVIKIELPGRSKAFLEAEVRP 69
           ++S  L +A C    ++   GGA  Q  EVG++ ++ +   +  ELPGR+ A+  AEVRP
Sbjct: 15  MLSGGLMLAGCDSGNNQ--QGGAQQQMPEVGIVTLKTEALNVMTELPGRTSAYRIAEVRP 72

Query: 70  QVNGIITKRSFVEGGNVKQGESLYQIDSATYKAALVSANADLARANASLASAKAKAARYQ 129
           QV GII KR+FVEG ++K G SLYQID ATY+A+  SA   LA+A A    A+    RY+
Sbjct: 73  QVGGIILKRNFVEGSDIKAGASLYQIDPATYQASYNSAKGSLAQAQAQAEIARLTVNRYK 132

Query: 130 QLVKTNAISKQDFDEADAAYKEALASVTVAEAAINTAKINLEYTEVLAPISGRIGKSSVT 189
            L+ TN +SKQD+D+A A  ++A A+V  A+AA++TA+INL YT+V +PI GR+GKS+VT
Sbjct: 133 PLLGTNYVSKQDYDQAVATSRQADAAVQAAKAAVDTAQINLAYTKVNSPIEGRVGKSTVT 192

Query: 190 AGALVTANQSQTLATIQQLDPINVDIAQSSAQLLRLKAKLKQGKLLAAD-NADVQLVLVD 248
            GALV   Q+  L T+QQLDPI VD+ QSS   L+LK +L+ G L  ++  A+V+L+L +
Sbjct: 193 EGALVATGQATALTTVQQLDPIYVDVTQSSNDFLQLKKELENGTLKQSEGKANVRLLLEN 252

Query: 249 GTVYGHTGKLQFAEVSVDQNTGSVILRAEFPNPDGVLLPGMYVRAMLNAGTDPQAILVPQ 308
           G+ Y   G L+F++V+VD+ TGS+ LRA FPNP   LLPGM+VRA L++G +P A+LVPQ
Sbjct: 253 GSEYAEAGTLEFSDVTVDETTGSITLRAIFPNPQHNLLPGMFVRARLDSGVNPTALLVPQ 312

Query: 309 KAITRNAKGEAVAMVVNAQGQVEAKIVTTAEVINHQWRVTSGLAVGDQVIVEGLQKIRPG 368
           + +TR+ +G+A AMVV    +VE + + T++ I  +W VT GL  GD+VIV GLQKIRPG
Sbjct: 313 QGVTRDPRGQATAMVVGEGDKVEPRTLKTSKAIGDKWLVTEGLKAGDRVIVTGLQKIRPG 372

Query: 369 APVIPKVISATQAQ 382
           A V  K ++    Q
Sbjct: 373 AQVKTKEVAPENQQ 386