Pairwise Alignments

Query, 382 a.a., multidrug resistance protein, AcrA/AcrE family (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 385 a.a., multidrug efflux RND transporter periplasmic adaptor subunit AcrE from Escherichia coli ECRC98

 Score =  328 bits (840), Expect = 2e-94
 Identities = 179/363 (49%), Positives = 249/363 (68%), Gaps = 6/363 (1%)

Query: 10  VISVALWMAACSPQEDKAAHGGAGPQSMEVGVIKVEAKPQVIKIELPGRSKAFLEAEVRP 69
           +IS AL +A C+ + ++ AH G  PQ   V V  V+  P  +K ELPGR+ A+  AEVRP
Sbjct: 15  LISAAL-IAGCNDKGEEKAHVGE-PQ---VTVHIVKTAPLEVKTELPGRTNAYRIAEVRP 69

Query: 70  QVNGIITKRSFVEGGNVKQGESLYQIDSATYKAALVSANADLARANASLASAKAKAARYQ 129
           QV+GI+  R+F EG +V+ G+SLYQID ATY+A   SA  +LA++ A+ A A     RY 
Sbjct: 70  QVSGIVLNRNFTEGSDVQAGQSLYQIDPATYQANYDSAKGELAKSEAAAAIAHLTVKRYV 129

Query: 130 QLVKTNAISKQDFDEADAAYKEALASVTVAEAAINTAKINLEYTEVLAPISGRIGKSSVT 189
            LV T  IS+Q++D+A A  ++A A+V  A+A + +A+INL YT+V APISGRIGKS+VT
Sbjct: 130 PLVGTKYISQQEYDQAIADARQADAAVIAAKATVESARINLAYTKVTAPISGRIGKSTVT 189

Query: 190 AGALVTANQSQTLATIQQLDPINVDIAQSSAQLLRLKAKLKQGKLLAAD-NADVQLVLVD 248
            GALVT  Q+  LAT+QQLDPI VD+ QSS   +RLK  ++QG L   +  ++V+LV+ +
Sbjct: 190 EGALVTNGQTTELATVQQLDPIYVDVTQSSNDFMRLKQSVEQGNLHKENATSNVELVMEN 249

Query: 249 GTVYGHTGKLQFAEVSVDQNTGSVILRAEFPNPDGVLLPGMYVRAMLNAGTDPQAILVPQ 308
           G  Y   G LQF++V+VD++TGS+ LRA FPNP   LLPGM+VRA ++ G  P AIL+PQ
Sbjct: 250 GQTYPLKGTLQFSDVTVDESTGSITLRAVFPNPQHTLLPGMFVRARIDEGVQPDAILIPQ 309

Query: 309 KAITRNAKGEAVAMVVNAQGQVEAKIVTTAEVINHQWRVTSGLAVGDQVIVEGLQKIRPG 368
           + ++R  +G+A  ++VN + QVE + V  ++ I  +W ++ GL  GDQVIV GLQK RPG
Sbjct: 310 QGVSRTPRGDATVLIVNDKSQVEVRPVVASQAIGDKWLISEGLKSGDQVIVSGLQKARPG 369

Query: 369 APV 371
             V
Sbjct: 370 EQV 372