Pairwise Alignments

Query, 382 a.a., multidrug resistance protein, AcrA/AcrE family (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 385 a.a., multidrug transporter subunit MdtE from Escherichia coli ECRC62

 Score =  311 bits (796), Expect = 3e-89
 Identities = 171/365 (46%), Positives = 243/365 (66%), Gaps = 7/365 (1%)

Query: 17  MAACSPQEDKAAHGGAGPQSMEVGVIKVEAKPQVIKIELPGRSKAFLEAEVRPQVNGIIT 76
           + AC   +DK+A   A   + EVGV+ +      +  ELPGR+  +  AE+RPQV GII 
Sbjct: 18  LTAC---DDKSAENAAA-MTPEVGVVTLSPGSVNVLSELPGRTVPYEVAEIRPQVGGIII 73

Query: 77  KRSFVEGGNVKQGESLYQIDSATYKAALVSANADLARANASLASAKAKAARYQQLVKTNA 136
           KR+F+EG  V QG+SLYQID A  +A L SA   LA+A ++ ++A+    R   L+KTN 
Sbjct: 74  KRNFIEGDKVNQGDSLYQIDPAPLQAELNSAKGSLAKALSTASNARITFNRQASLLKTNY 133

Query: 137 ISKQDFDEADAAYKEALASVTVAEAAINTAKINLEYTEVLAPISGRIGKSSVTAGALVTA 196
           +S+QD+D A     EA A+VTVA+AA+  A INL+Y  V +PI+G  GKSSVT GALVTA
Sbjct: 134 VSRQDYDTARTQLNEAEANVTVAKAAVEQATINLQYANVTSPITGVSGKSSVTVGALVTA 193

Query: 197 NQSQTLATIQQLDPINVDIAQSSAQLLRLKAKLKQGKLLAAD-NADVQLVLVDGTVYGHT 255
           NQ+ +L T+Q+LDPI VD+ QS    LR+K ++  G++     +  VQL L +G  Y  T
Sbjct: 194 NQADSLVTVQRLDPIYVDLTQSVQDFLRMKEEVASGQIKQVQGSTPVQLNLENGKRYSQT 253

Query: 256 GKLQFAEVSVDQNTGSVILRAEFPNPDGVLLPGMYVRAMLNAGTDPQAILVPQKAITRNA 315
           G L+F++ +VD+ TGSV LRA FPNP+G LLPGMYV A+++ G+    +LVPQ+ +T NA
Sbjct: 254 GTLKFSDPTVDETTGSVTLRAIFPNPNGDLLPGMYVTALVDEGSRQNVLLVPQEGVTHNA 313

Query: 316 KGEAVAMVVNAQGQVEAKIVTTAEVINHQWRVTSGLAVGDQVIVEGLQKIRPGAPVIPKV 375
           +G+A A++++    V+ + +  ++ I  QW VTSGL  GD+VIV GLQ+IRPG  +  + 
Sbjct: 314 QGKATALILDKDDVVQLREIEASKAIGDQWVVTSGLQAGDRVIVSGLQRIRPG--IKARA 371

Query: 376 ISATQ 380
           IS++Q
Sbjct: 372 ISSSQ 376