Pairwise Alignments

Query, 949 a.a., formate dehydrogenase, alpha subunit (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 1015 a.a., formate dehydrogenase-N subunit alpha from Escherichia coli ECRC98

 Score =  256 bits (653), Expect = 7e-72
 Identities = 200/684 (29%), Positives = 309/684 (45%), Gaps = 119/684 (17%)

Query: 18  LGLNRRQFLKSAGLATGGIAAASMLGTGMMRK---AEAKDIPHNAPTEVKRTICSHCSVG 74
           + ++RRQF K   +  GG+A  ++   G   K   A+A++       E++ T C++CSVG
Sbjct: 1   MDVSRRQFFK---ICAGGMAGTTVAALGFAPKQALAQARNYKLLRAKEIRNT-CTYCSVG 56

Query: 75  CGVYA-EVQNGVWTGQEPAF------DHPFNQGGHCAKGAALREHGHGEKRLKYPMKLEG 127
           CG+    + +G    +E  +      DHP ++G  C KGA L ++ + E RL+YP     
Sbjct: 57  CGLLMYSLGDGAKNAREAIYHIEGDPDHPVSRGALCPKGAGLLDYVNSENRLRYPEYRAP 116

Query: 128 G--KWKKISWDQAINEVGDKMMAIRQ-------ESGPD-----SIYFMGSAKFSNEQAYL 173
           G  KW+ ISW++A + +   M A R        E G       S   + ++  SNE   L
Sbjct: 117 GSDKWQCISWEEAFSRIAKLMKADRDANFIEKNEQGVTVNRWLSTGMLCASGASNETGML 176

Query: 174 YRKFAALWGTNNVDHSARICHSTTVAGVANTWGYGAQTNSVNDIRHSKCILFVGSNPSEA 233
            +KFA   G   VD+ AR+ H  TVA +A T+G GA TN   DI+++  ++ +G N +EA
Sbjct: 177 TQKFARSLGMLAVDNQARV*HGPTVASLAPTFGRGAMTNHWVDIKNANVVMVMGGNAAEA 236

Query: 234 HPVAMQHILVAKERG-AKIIVVDPRFTRTAAKSDEYVHIRPGTDIPFIYGLLWHIFENGW 292
           HPV  +  + AK    A +IVVDPRFTRTA+ +D Y  IR GTDI F+ G+L ++ EN  
Sbjct: 237 HPVGFRWAMEAKNNNDATLIVVDPRFTRTASVADIYAPIRSGTDITFLSGVLRYLIENNK 296

Query: 293 EDKDFIKRRV-------------------YGMER-------------------------- 307
            + +++K                      Y  E+                          
Sbjct: 297 INAEYVKHYTNASLLVRDDFAFEDGLFSGYDAEKRQYDKSSWNYQFDENGYAKRDETLTH 356

Query: 308 -------IREEVKKYTPEEVENVVGAPKAQMYRVAKMMAET----KPGSIVWCMGGTQHH 356
                  ++E V +YTP+ VEN+ G PKA   +V +++A T    +  + ++ +G TQH 
Sbjct: 357 PRCVWNLLKEHVSRYTPDVVENICGTPKADFLKVCEVLASTSAPDRTTTFLYALGWTQHT 416

Query: 357 VGNANTRSYCILQLALGNMGVTGGGTNIFRGHDNVQGASDFGLSFDDLPGYFGLTS---- 412
           VG  N R+  ++QL LGNMG+ GGG N  RGH N+QG +D GL    LPGY  L S    
Sbjct: 417 VGAQNIRTMAMIQLLLGNMGMAGGGVNALRGHSNIQGLTDLGLLSTSLPGYLTLPSEKQV 476

Query: 413 ------------GSWAHWANVWDLDPKWVTSRFDQGEYLGQSPQTSPGIPCSRWHDGVLE 460
                        + A   N W   PK+  S            + + G       D   +
Sbjct: 477 DLQSYLEANTPKATLAGQVNYWSNYPKFFVSLMKSFYGDAAQKENNWGYDWLPKWDQTYD 536

Query: 461 DKTKIAQKDNIRLAFFWGQSVNTETR---GREVRQALDKMDTVVVVDPFPTMAGVMHQR- 516
                   D  ++  ++ Q  N         +V   L K+  +VV+DP  T      Q  
Sbjct: 537 VIKYFNMMDEGKVTGYFCQGFNPVASFPDKNKVVSCLSKLKYMVVIDPLVTETSTFWQNH 596

Query: 517 -----------KDGVYLLPAATQFETYGSVSATNRSIQWRSKVIEPLFESLPDHVIMCKL 565
                      +  V+ LP+    E  GS++ + R +QW  K  +   E+  D  I+  +
Sbjct: 597 GESNDVDPASIQTEVFRLPSTCFAEEDGSIANSGRWLQWHWKGQDAPGEARNDGEILAGI 656

Query: 566 AKKVGIDKELFKHIKVNGEEPLIE 589
              +   +EL++     G EPL++
Sbjct: 657 YHHL---RELYQAEGGKGVEPLMK 677



 Score = 44.7 bits (104), Expect = 3e-08
 Identities = 61/208 (29%), Positives = 86/208 (41%), Gaps = 30/208 (14%)

Query: 751  PYGNGKARAVVWNFPDDIPLHREPLYTPRRDLVAKYPTYEDRMVARLPTLYKSIQDKDFA 810
            P G G+  A+        P H EP+ TP    +   P + + +   +  LY+    +   
Sbjct: 829  PEGMGRLFAINKMAEGPFPEHYEPIETP----LGTNPLHPNVVSNPVVRLYEQDALRMGK 884

Query: 811  KD-FPLALTSGRLVEYEGGGEETRSNPWLAELQQEMFIEISPADAADRGIRDGDNVFVHS 869
            K+ FP   T+ RL E+      T+     A  Q E F+EIS   AA +GI +GD V V S
Sbjct: 885  KEQFPYVGTTYRLTEHFHTW--TKHALLNAIAQPEQFVEISETLAAAKGINNGDRVTVSS 942

Query: 870  PEGAKITVKAMVTPRVVP--------GECFMPYHFAGVFEGESLAKNYPEGTVPYVIGES 921
              G  I   A+VT R+ P            +P H+   FEG +              G  
Sbjct: 943  KRGF-IRAVAVVTRRLKPLNVNGQQVETVGIPIHWG--FEGVARK------------GYI 987

Query: 922  ANTILTYGYDVVTQMQETKSSLCQISKA 949
            ANT+     D  +Q  E K+ L  I KA
Sbjct: 988  ANTLTPNVGDANSQTPEYKAFLVNIEKA 1015