Pairwise Alignments

Query, 301 a.a., conserved domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 300 a.a., helix-turn-helix domain-containing protein from Magnetospirillum magneticum AMB-1

 Score =  125 bits (315), Expect = 9e-34
 Identities = 94/297 (31%), Positives = 138/297 (46%), Gaps = 15/297 (5%)

Query: 10  MSAKQVAEYLDLNEKKVYAMANDRILPATKITGKWLFPKVLIDRWVMDSCHSGMLTDR-- 67
           M   QVA YL + E+KVY +  +R +P T++TGKWLFPK  ID W+  +  S   T R  
Sbjct: 11  MDTHQVARYLRIKERKVYELLKERRIPCTRVTGKWLFPKGEIDAWLKRNSASPADTPRQG 70

Query: 68  ---LLITGSDDPLLSMLVARLMAQVGSRELISYSATGSRL-GLELLAKGYADVCTLHWGS 123
              +++ GS DPLL       + +VG    +     GS L GL  LA G A +  +H   
Sbjct: 71  AVPMVVAGSHDPLLEW----CLREVGGGLAV---LPGSSLDGLRQLAMGEAAMAGIHLLD 123

Query: 124 MEDRNIRHPALLKGYNNHQQWIMVHGYSRQQGLIMRPDMHHGCQEEDKVLTLPWRWVSRQ 183
            E      P + +   + +  +++    RQQGL++      G      +     R V RQ
Sbjct: 124 AESGAYNLPQVQEVLAD-RNVVLIEWAWRQQGLVVASGNPLGLSSLADLAAAKARIVLRQ 182

Query: 184 GGAGSQQHLEQWLLKHGARLDQLNVV-LTAYSERELAGYIARGDADIGFGCQSVALESGL 242
            GAGS+  L++ L + G     L    +   SE ++   I  G AD G    SVA    L
Sbjct: 183 EGAGSRLLLDRLLAEAGVPAGSLTTAQVPVRSETDVGLAILEGAADAGLAVASVAKSLKL 242

Query: 243 SFVPLIKESFDFVMPQSIYFRRQLQQLFTMLSSGHTRQMAALLGGYDLTDCGQLLWS 299
            FVPL +E FD  + +  YF   +Q L     +    +    LGGYD++  G + W+
Sbjct: 243 DFVPLHRERFDLAIDRRAYFEAPIQALLAFTRTQEFARRVETLGGYDVSGIGSIRWN 299