Pairwise Alignments

Query, 401 a.a., ISSod5, transposase (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 402 a.a., IS256 family transposase from Dickeya dianthicola 67-19

 Score =  359 bits (922), Expect = e-104
 Identities = 179/392 (45%), Positives = 262/392 (66%), Gaps = 9/392 (2%)

Query: 13  QALREGKDLTGKDGILTPLIKQLTEAALAAELDGHL-----ASTEGANRKNGKTTKTVKS 67
           + L+   DL     +LT L     E AL  EL  HL     A   G+N +NG ++KTV  
Sbjct: 15  KGLKTEADLNAFSRMLTKLT---VETALNTELTEHLGHEKNAPKSGSNTRNGYSSKTVLC 71

Query: 68  PLGNFELNTPRDRAGTFEPQLVKKHQTQLTDEMERKIIGLFSLGSSYQDIRAHIEDMYGM 127
             G  EL+TPRDR  TFEPQL+KK+QT++T +M+ +I+ L++ G + ++I +  ++MY  
Sbjct: 72  DDGEIELSTPRDRENTFEPQLIKKNQTRIT-QMDSQILSLYAKGMTTREIVSTFKEMYDA 130

Query: 128 SVSNGTVNAITDKLLPELQAWRERELEPLYPVIWLDAIHYKIKENGRFISKAVYTILALN 187
            VS   ++ +TD +  ++  W+ R L PLYP+++LD I  K++ +G  I+KAV+  L +N
Sbjct: 131 DVSPTLISKVTDAVKEQVTEWQNRPLNPLYPIVYLDCIVVKVRHSGSVINKAVFLALGIN 190

Query: 188 VEGKKELLGLYLSDNEGAHHWLSVLTDLYNRGVKDILIACVDGLKGFPEAIETIYPQTEV 247
            +G+KELLG++L++NEGA  WL+VLT+L NRG++DILIACVDGLKGFPEAI ++YPQT +
Sbjct: 191 TDGQKELLGMWLAENEGAKFWLNVLTELKNRGLQDILIACVDGLKGFPEAINSVYPQTHI 250

Query: 248 QLCVIHQIRNSMKYVASKHQKAFMADLKCVYKAATLNAAEMALDELETKWGDKYPVVIKS 307
           QLC+IH +RNS+KYV+ K  K   + LK VY+A T  AA MALD+    W +KYP + KS
Sbjct: 251 QLCIIHMVRNSLKYVSWKDYKGVTSGLKAVYQAPTEEAALMALDKFSGIWDEKYPQISKS 310

Query: 308 WRNKWALLSVYFKYPDYVRTAIYTTNAVEAVHRQFRKLTKTKGGFANENSLLKLLYAGIL 367
           WR  W  L+ +F YP  +R AIYTTNA+E+++   R+  K +  F  ++S+ K++Y  I 
Sbjct: 311 WRAHWENLNTFFGYPPDIRKAIYTTNAIESLNSVIRQAIKKRKVFPTDDSVRKVIYLAIQ 370

Query: 368 KASERWTHPIQNWNLTLSQLSIHFEGRLENHI 399
            AS++W+ PIQNW L +S+  I F  RL +H+
Sbjct: 371 SASKKWSMPIQNWRLAMSRFIIEFGDRLSDHL 402