Pairwise Alignments

Query, 344 a.a., GGDEF family protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 227 a.a., GGDEF domain-containing protein from Magnetospirillum magneticum AMB-1

 Score =  145 bits (365), Expect = 1e-39
 Identities = 83/216 (38%), Positives = 123/216 (56%), Gaps = 1/216 (0%)

Query: 118 DWKIVHSGISIPYGIAKKGEIYPMTSLEERNRELESIIQARTYELAEANNRLEKLSNTDG 177
           DW+   S   +   + ++ ++      +E   EL S   A   +LAEA+  +  +S TD 
Sbjct: 8   DWRNSASANFVSLILEQQAQLSDQRINKELMTELVSQFVASERKLAEAHAAVLAMSRTDA 67

Query: 178 LTNIGNRRLFDQMLQKEWSRGQRNNTPLSLIMLDIDHFKLFNDHYGHLAGDDCLKMLANG 237
           LT I NRR FD+ L +E +R  R++TP+ L+++DID FKL+ND+YGH AGD+CL  +A  
Sbjct: 68  LTGIANRRWFDECLAQELARALRSSTPIGLLLMDIDCFKLYNDNYGHAAGDECLIKVAQA 127

Query: 238 LSQSGRRAGELVARYGGEEFVILLPNTDLQTALDTAKHVHQLIQSLAIPH-IKTNLGIVT 296
           + +  +R  +L ARYGGEE V +LP+TD+         + + I+  AIPH       IVT
Sbjct: 128 VHEVVKRPPDLAARYGGEELVCILPDTDVIGVRKVGGALLEAIRHAAIPHAFSKAANIVT 187

Query: 297 VSVGVACLLPSDKHNALELVHQADTALYLAKSAGRN 332
           VS+G   L+P     +  L+  AD  LY +K  GRN
Sbjct: 188 VSIGGISLIPEYGTTSKMLIEAADAMLYQSKENGRN 223