Pairwise Alignments

Query, 500 a.a., sensor histidine kinase (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 972 a.a., Two-component system sensor histidine kinase from Pseudomonas sp. S08-1

 Score =  102 bits (254), Expect = 6e-26
 Identities = 71/239 (29%), Positives = 124/239 (51%), Gaps = 13/239 (5%)

Query: 271 REFNRATRLASQQVS-FVGQVSHELKTPLTNITLYAEMLNEMEAE---ENDQRAHYLGVI 326
           R  +   + ASQ  S F+  +SHEL+TPL  I  +A+++ E+EA+   E +Q A Y   I
Sbjct: 592 RRASHEAQAASQAKSRFLSSMSHELRTPLNAIHGFAQLI-ELEAQDHAERNQEAEYAREI 650

Query: 327 ISESQRLSRLIQNVLTFTKLP----QICIRQVDINQLMNQIYTAFKPVFEAKEIHLNL-- 380
           +  S+ L+ L+ ++L  + +     Q+ ++ VDI  L+       +P  + + + L +  
Sbjct: 651 VLASRHLTSLVDDILDLSSIESRQQQLQLQPVDIGPLLRSCAELIQPEVQQRRLQLQVLA 710

Query: 381 NINGQLSTKTDVDLVTQIISNLLSNAEKYAATGKQVDLNVEQDNDNIFIHIRDYGNGITA 440
             +  L    D   + Q++ NLLSNA KY +    + +  E     + + + D G G++ 
Sbjct: 711 EAHPPLFVLADPRRLRQVLLNLLSNAIKYNSPQGMIRMGYEVRASGVRLWVDDSGPGLST 770

Query: 441 KELKQIFQPFYRVRSSITEGVSGTGIGLTIARQLAETLSGEINAINNEP-GMTFTLRLP 498
           ++  Q+FQPF R+       + GTGIGL + R+LAE + GE+   ++   G  F + LP
Sbjct: 771 EQQAQLFQPFQRLGRE-NSNIPGTGIGLVLCRELAELMGGEMGFTSDVGLGSRFWIELP 828