Pairwise Alignments

Query, 500 a.a., sensor histidine kinase (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 951 a.a., two-component system sensor histidine kinase RcsC from Erwinia tracheiphila SCR3

 Score =  100 bits (250), Expect = 2e-25
 Identities = 74/237 (31%), Positives = 126/237 (53%), Gaps = 13/237 (5%)

Query: 271 REFNRATRLASQQVS-FVGQVSHELKTPLTNITLYAEMLNEMEAEENDQRAHYLGVIISE 329
           +E   A   ASQ  S F+  VSHEL+TPL  I    ++L      +       +  + + 
Sbjct: 458 QEMAHAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKSLPKGVDSL--VTAMNNS 515

Query: 330 SQRLSRLIQNVLTFTKLP----QICIRQVDINQLMNQIYTAFKPVFEAKEIHLNLNINGQ 385
           S  L ++I ++L F+K+     +I  R+    +++  I +++  +   K + L   I+G 
Sbjct: 516 SSLLLKIISDILDFSKIESEQLRIEPREFSPREVITHITSSYLAMVVKKRLTLWCFIDGD 575

Query: 386 LSTKTDVDLVT--QIISNLLSNAEKYAATGKQVDLNVEQDNDNIFIHIRDYGNGITAKEL 443
           +    + D +   Q+ISNLL+NA K+  TG  +  +  +D   +F  +RD G GI AKE+
Sbjct: 576 VPVTLEGDPIRLQQVISNLLNNAIKFTHTGGIMLQSYVKDGYLVFC-VRDTGVGIPAKEI 634

Query: 444 KQIFQPFYRVRSSITEGVSGTGIGLTIARQLAETLSGEINAINNEPGM--TFTLRLP 498
            ++F PF++V S +     GTG+GL I  +L   + G+I  +++EPGM   FT+R+P
Sbjct: 635 PRLFDPFFQVGSGVQRNFHGTGLGLAICEKLINMMDGDIE-VDSEPGMGSQFTVRIP 690