Pairwise Alignments

Query, 500 a.a., sensor histidine kinase (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 949 a.a., two-component system sensor histidine kinase RcsC from Escherichia coli ECRC101

 Score =  117 bits (293), Expect = 2e-30
 Identities = 83/237 (35%), Positives = 132/237 (55%), Gaps = 13/237 (5%)

Query: 271 REFNRATRLASQQVS-FVGQVSHELKTPLTNITLYAEMLNEMEAEENDQRAHYLGVIISE 329
           +E  +A   ASQ  S F+  VSHEL+TPL  I    ++L   E  +   R   +  + + 
Sbjct: 457 QEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRL--VTAMNNS 514

Query: 330 SQRLSRLIQNVLTFTKLP--QICI--RQVDINQLMNQIYTAFKPVFEAKEIHLNLNINGQ 385
           S  L ++I ++L F+K+   Q+ I  R+    ++MN I   + P+   K++ L   I   
Sbjct: 515 SSLLLKIISDILDFSKIESEQLMIEPREFSPREVMNHITANYLPLVVRKQLGLYCFIEPD 574

Query: 386 LSTKTDVD--LVTQIISNLLSNAEKYAATGKQVDLNVEQDNDNIFIHIRDYGNGITAKEL 443
           +    + D   + Q+ISNLLSNA K+  TG  V L+V  D D + I +RD G GI AKE+
Sbjct: 575 VPVALNGDPMRLQQVISNLLSNAIKFTDTGCIV-LHVRADGDYLSIRVRDTGVGIPAKEV 633

Query: 444 KQIFQPFYRVRSSITEGVSGTGIGLTIARQLAETLSGEINAINNEPGM--TFTLRLP 498
            ++F PF++V + +     GTG+GL I  +L   + G+I ++++EPGM   FT+R+P
Sbjct: 634 VRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDI-SVDSEPGMGSQFTVRIP 689