Pairwise Alignments

Query, 876 a.a., GGDEF domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 695 a.a., conserved membrane protein of unknown function from Pseudomonas putida KT2440

 Score =  220 bits (560), Expect = 3e-61
 Identities = 150/451 (33%), Positives = 224/451 (49%), Gaps = 15/451 (3%)

Query: 416 LEEKVAARTTALAELNKDLEKEIRQRRNMEAKLVHDAKHDALTGLPNRAMFMERLNHAIK 475
           L+ ++ ART  LA       +E+ Q           A HD LT LPNR +  +R+  AI 
Sbjct: 237 LDARLEARTAELARSLTLANQELTQL----------ALHDTLTDLPNRTLLADRIEQAIA 286

Query: 476 HVRRHSLEQFALLFIDLDRFKLINDTMGHLEGDRFLIETATRLRSCIRSNDTLARLGGDE 535
            V       FAL+FIDLD FK +ND  GH  GD  L   A RLR  + S DTLAR+GGDE
Sbjct: 287 KVAEQG-GCFALMFIDLDGFKPVNDAFGHHIGDLLLKAVAARLRGHLHSQDTLARIGGDE 345

Query: 536 FVILLDTINDMNDARDVAERVIRKISQSYHFGTIEFHSGASIGITI-SGNKLDTSESMLR 594
           FV+L++ + + NDA DVA + +  +S+ +     +    AS+GI +  GN  D  E +LR
Sbjct: 346 FVLLVE-LQEPNDAMDVAVKQVNLVSRPFRVAEHDLQLSASLGIVLYPGNGQDQHE-LLR 403

Query: 595 NADTAMYQAKANGKGCYVIFDDSASQQKMQDIAFENDFRQALQADELQLNFLPIVDLQTR 654
           NAD AMY AK+ GK  Y  FD S +    Q +    D R AL+  + +L++ P  D Q  
Sbjct: 404 NADAAMYHAKSAGKNGYSFFDVSMNSNARQQLQLLQDLRLALEQRQFRLHYQPKFDAQAC 463

Query: 655 QTRSLECRLSWEHPQWGSIPQEVLNKLAEQANLQVELDKYAIRLLDKCYHQLLISHGDNL 714
           Q    E  L WEHPQ G +  +    LAE+  L + + ++ +    +   Q L       
Sbjct: 464 QPIGAEALLRWEHPQQGLLLPDRFIGLAEKTGLIIPIGEWVLTEACRQMRQWLDQGHHGW 523

Query: 715 DLHLMLSSQHLKHKHVLRGLKTTLKQTQLPLSQLWLFFNEKALVQETENHISGFELLNKL 774
            + + LS+    H  ++  +   L+Q  LP + L L   E   + + +  ++  + L+ +
Sbjct: 524 RMAVNLSAIQFCHAGLVDSVARALQQNGLPANCLTLEITETTAMHDADASLTVLQRLSDM 583

Query: 775 GVNLGISHYGSGHSPLNSLLFLPLKGLKLDANITKQL-QDEQHIKLMSAYQKAASTLELQ 833
           GV+L I  +G+G+S L  L  LP   LK+D    + L QD     ++SA       L L+
Sbjct: 584 GVDLSIDDFGTGYSSLMYLKRLPANELKIDRGFVRDLEQDSDDAAIVSAIVALGQALGLR 643

Query: 834 TFVDGLQSPEQINIFHALGYRFGQGCALASP 864
              +G+++ +Q +    LG    QG  L  P
Sbjct: 644 IVAEGVETDKQQDFLTRLGCDSLQGYLLGQP 674