Pairwise Alignments

Query, 876 a.a., GGDEF domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 733 a.a., Sensory box protein/GGDEF domain protein from Pseudomonas putida KT2440

 Score =  214 bits (544), Expect = 2e-59
 Identities = 134/437 (30%), Positives = 222/437 (50%), Gaps = 8/437 (1%)

Query: 434 LEKEIRQRRNMEAKLVHDAKHDALTGLPNRAMFMERLNHAIKHVRRHSLEQFALLFIDLD 493
           + ++I ++++ E +L  +A HD LTGL NR    +RL  A +  R+  + Q A+++IDLD
Sbjct: 291 IARDISKQKHYERQLSINASHDGLTGLLNRLSLEDRLVQACRSSRQRKV-QLAVMYIDLD 349

Query: 494 RFKLINDTMGHLEGDRFLIETATRLRSCIRSNDTLARLGGDEFVILLDTINDMNDARDVA 553
            FK IND++GH  GD+ LIE A RL   +R  DT+ R+GGDEFV+LL  +    DA  VA
Sbjct: 350 GFKSINDSIGHYFGDQVLIEVAQRLTQQVRPADTVVRMGGDEFVVLLTDLLRDEDAVPVA 409

Query: 554 ERVIRKISQSYHFGTIEFHSGASIGITISGNKLDTSESMLRNADTAMYQAKANGKGCYVI 613
           ER++  I + Y    I+ H   SIGIT+S   ++    +++ AD AMY+AK  G+  +  
Sbjct: 410 ERLLASIGKPYCIQGIDLHVSTSIGITVSDGHIEQPMKLIQQADMAMYKAKQQGRNNFQW 469

Query: 614 FDDSASQQKMQDIAFENDFRQALQADELQLNFLPIVDLQTRQTRSLECRLSWEHPQWGSI 673
           +    + +  +  +  ND ++A++     L++ P ++ +TR+   +E  L WEHP  G I
Sbjct: 470 YTSDLNHRVCEHRSLRNDLQKAIKTQSFSLHYQPQIEARTRRVVGIEALLRWEHPVRGFI 529

Query: 674 PQEVLNKLAEQANLQVELDKYAIRLLDKCYHQL--LISHGDN-LDLHLMLSSQHLKHKHV 730
              V   +AE +   + L   ++ +LD    QL  L   G N + + + +S  H +    
Sbjct: 530 SPAVFIPVAEDSGQIIPL---SLWVLDTACAQLRDLCDQGFNGISMAVNISPMHFQCGQF 586

Query: 731 LRGLKTTLKQTQLPLSQLWLFFNEKALVQETENHISGFELLNKLGVNLGISHYGSGHSPL 790
           +  ++  L +  L   QL L   E  L+   E  I+    L  LGV + +  +G+G S L
Sbjct: 587 VECIQAVLSKHGLSAGQLELEITESLLLHNVEQAIATLHRLKDLGVRIALDDFGTGFSSL 646

Query: 791 NSLLFLPLKGLKLDANITKQLQDEQH-IKLMSAYQKAASTLELQTFVDGLQSPEQINIFH 849
           + L  LP+  +K+D +  + +    H   +       A  L L    +G+++  Q+N   
Sbjct: 647 SYLKCLPIDKIKIDRSFIQDISTNPHDAAITQGIISMAHHLSLSVVAEGVETAPQVNFLE 706

Query: 850 ALGYRFGQGCALASPFA 866
                  QG   A P +
Sbjct: 707 RGRCDILQGYYFARPMS 723