Pairwise Alignments

Query, 876 a.a., GGDEF domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 1098 a.a., PAS/PAC/GAF sensor-containing diguanylate cyclase/phosphodiesterase from Pseudomonas putida KT2440

 Score =  219 bits (559), Expect = 5e-61
 Identities = 138/448 (30%), Positives = 229/448 (51%), Gaps = 10/448 (2%)

Query: 436  KEIRQRRNMEAKLVHDAKHDALTGLPNRAMFMERLNHAIKHVRRHSLEQFALLFIDLDRF 495
            +++ Q +N +A++ H A HD LT LPNRA+ M+RL+  I  ++RH+L   ALLF+DLD F
Sbjct: 645  RDVSQLKNAQAQIRHLAYHDPLTNLPNRALLMDRLSQQIALLKRHNLRG-ALLFLDLDHF 703

Query: 496  KLINDTMGHLEGDRFLIETATRLRSCIRSNDTLARLGGDEFVILLDTINDMND-----AR 550
            K IND++GH  GD  L     RL + +R  DT+ARLGGDEFV+LL  +    +      R
Sbjct: 704  KHINDSLGHPVGDTVLKIITARLEASVRLEDTVARLGGDEFVVLLSGLEGSREHVEEKVR 763

Query: 551  DVAERVIRKISQSYHFGTIEFHSGASIGITISGNKLDTSESMLRNADTAMYQAKANGKGC 610
            ++A+ +   +++             SIG+ +  +   T   +L+ AD A+Y+AK +G+  
Sbjct: 764  ELADTLRELLAEPMSLDGQRLQVTPSIGVALIPDHGTTPADLLKRADIALYRAKDSGRNT 823

Query: 611  YVIFDDSASQQKMQDIAFENDFRQALQADELQLNFLPIVDLQTRQTRSLECRLSWEHPQW 670
              +F  +  +   + +  END R AL   EL L+F P VD +  +    E  L W HPQ 
Sbjct: 824  TQLFHTTMQKAASERLRMENDLRLALARGELALHFQPQVDARDNRIVGAEVLLRWHHPQL 883

Query: 671  GSIPQEVLNKLAEQANLQVELDKYAI-RLLDKCYHQLL--ISHGDNLDLHLMLSSQHLKH 727
            G  P     ++ E++ L +E+  + +    D C   L   +   D+ +L + +S +  + 
Sbjct: 884  GQQPPSQFIQVLEESGLILEVGSWILDEACDACARMLTDGLIDADDFNLCVNISPRQFRQ 943

Query: 728  KHVLRGLKTTLKQTQLPLSQLWLFFNEKALVQETENHISGFELLNKLGVNLGISHYGSGH 787
               +  +  +L   +LP   L L   E  ++Q  E+ IS    L + GV+  +  +G+G+
Sbjct: 944  NDFVGRVLRSLDDYRLPRQMLTLEITEGIVIQNLEDTISKMCELKRYGVSFAMDDFGTGY 1003

Query: 788  SPLNSLLFLPLKGLKLDANITKQLQ-DEQHIKLMSAYQKAASTLELQTFVDGLQSPEQIN 846
            S L  L  LP+  LK+D +  +    D    +++ A    A +L+L    +G++  EQ+ 
Sbjct: 1004 SSLTYLKRLPVDALKIDQSFVRDAPVDPNDAEIVRAIVAMARSLDLAVIAEGVELTEQLA 1063

Query: 847  IFHALGYRFGQGCALASPFALVETQQLV 874
                LG    QG   + P  L E +Q++
Sbjct: 1064 FLERLGCHLYQGYLHSRPLPLPEFRQML 1091