Pairwise Alignments

Query, 876 a.a., GGDEF domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 1276 a.a., Sensory box protein from Pseudomonas putida KT2440

 Score =  201 bits (511), Expect = 2e-55
 Identities = 130/436 (29%), Positives = 216/436 (49%), Gaps = 12/436 (2%)

Query: 437  EIRQRRNMEAKLVHDAKHDALTGLPNRAMFMERLNHAIKHVRRHSLEQFALLFIDLDRFK 496
            +I +R+  E ++   A +DALT LPNR +F +RL +A++   R       L+F+DLDRFK
Sbjct: 826  DISERKASEQRIHRLAYYDALTHLPNRTLFQDRLYNALQQAERQKA-WVVLMFLDLDRFK 884

Query: 497  LINDTMGHLEGDRFLIETATRLRSCIRSNDTLARLGGDEFVILLDTIND----MNDARDV 552
             IND++GH  GDR L + A RL +C+  +DT+AR+GGDEF +LL         +N A  V
Sbjct: 885  PINDSLGHAAGDRMLKDMALRLLACVDDDDTVARMGGDEFTLLLQPRPTREMALNRAIHV 944

Query: 553  AERVIRKISQSYHFGTIEFHSGASIGITISGNKLDTSESMLRNADTAMYQAKANGKGCYV 612
            AE ++  + + +     EF   ASIGI +S         +++NADTAMY AK  GK  + 
Sbjct: 945  AENILGSLVRPFVLENREFFVTASIGIALSPQDGSELSQLMKNADTAMYHAKERGKNNFQ 1004

Query: 613  IFDDSASQQKMQDIAFENDFRQALQADELQLNFLPIVDLQTRQTRSLECRLSWEHPQWGS 672
             +    +   ++ +  E+D R A++ +E  L + P      ++    E  L W HP  G 
Sbjct: 1005 FYQAEMNASALERLELESDLRHAMEQNEFILYYQPQFSGDGKRLTGAEALLRWRHPTRGL 1064

Query: 673  IPQEVLNKLAEQANLQVELDKYAIRLLDKCYHQLLISHGDNL---DLHLMLSSQHLKHKH 729
            +P      + E+  L V++  + +R   +   QL   H   +    + + +S++      
Sbjct: 1065 VPPGDFIPVIEELGLVVDVGDWVLR---EASRQLKAWHKAKVRVPKVSVNISARQFSDGQ 1121

Query: 730  VLRGLKTTLKQTQLPLSQLWLFFNEKALVQETENHISGFELLNKLGVNLGISHYGSGHSP 789
            +   +   L+++ LP + L L   E  L++E    +     L  LG+++ +  +G+G+S 
Sbjct: 1122 LGTRIANILEESGLPPACLELELTESILMREVNEALQILASLKNLGLSIAVDDFGTGYSS 1181

Query: 790  LNSLLFLPLKGLKLDANITKQL-QDEQHIKLMSAYQKAASTLELQTFVDGLQSPEQINIF 848
            LN L   P+  LK+D      L + EQ  ++  A    A +L L    +G+++ EQ+   
Sbjct: 1182 LNYLKQFPIDVLKIDRTFVDGLPEGEQDAQIARAIIAMAHSLNLAVIAEGVETHEQLEFL 1241

Query: 849  HALGYRFGQGCALASP 864
               G    QG     P
Sbjct: 1242 REHGCDEVQGYLFGRP 1257