Pairwise Alignments

Query, 876 a.a., GGDEF domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 631 a.a., Sensory box protein from Pseudomonas putida KT2440

 Score =  213 bits (542), Expect = 3e-59
 Identities = 130/429 (30%), Positives = 221/429 (51%), Gaps = 2/429 (0%)

Query: 437 EIRQRRNMEAKLVHDAKHDALTGLPNRAMFMERLNHAIKHVRRHSLEQFALLFIDLDRFK 496
           +I   ++ E +L + A HD LTGLPNR +F +RL  A+   + +     ALL +DLD F+
Sbjct: 195 DISAIKHSEQELAYLAHHDPLTGLPNRLLFTDRLEQALAAAQANK-RGCALLLLDLDHFQ 253

Query: 497 LINDTMGHLEGDRFLIETATRLRSCIRSNDTLARLGGDEFVILLDTINDMNDARDVAERV 556
            IND +GH  GD+ L     RL   + +  TLARLGGDEF +L++    +  A  +A+ +
Sbjct: 254 SINDGLGHTIGDQLLKLVGERLGEVLGNGVTLARLGGDEFGVLVENCQQVGQAGKLAQCI 313

Query: 557 IRKISQSYHFGTIEFHSGASIGITISGNKLDTSESMLRNADTAMYQAKANGKGCYVIFDD 616
           I ++ + + F        AS+GI++  +    +E +LRNAD+A+Y+AK+NG+ CY ++ +
Sbjct: 314 IERMREPFQFDGNRLFISASVGISLYPSDALGAEQLLRNADSALYKAKSNGRACYALYTE 373

Query: 617 SASQQKMQDIAFENDFRQALQADELQLNFLPIVDLQTRQTRSLECRLSWEHPQWGSIPQE 676
             +      +    + R+AL+ DEL++ F P+ DL + +   +E  + W+HP+ G +P  
Sbjct: 374 ELTAHAQHRVETAAELRRALEQDELRVYFQPVHDLASGRQVGVETLVRWQHPRRGLVPPG 433

Query: 677 VLNKLAEQANLQVELDKYAIRLLDKCYHQLLISHGDNLDLHLMLSSQHLKHKHVLRGLKT 736
               +AE+  L  E+D + +R   +   Q          + + +SS+      + R +  
Sbjct: 434 EFIPIAERTGLIAEIDTWVLRQACRQMVQWQAQGRQLAFVGVNISSRLFGQHELYRQVAE 493

Query: 737 TLKQTQLPLSQLWLFFNEKALVQETENHISGFELLNKLGVNLGISHYGSGHSPLNSLLFL 796
            L  T L  + L L   E A++++ E  +     L +LGV L I  +G+G+S L  L  L
Sbjct: 494 VLHDTGLAPALLELEVTESAVMEDPEVALEQLHRLRELGVTLAIDDFGTGYSSLLRLKRL 553

Query: 797 PLKGLKLDANITKQLQ-DEQHIKLMSAYQKAASTLELQTFVDGLQSPEQINIFHALGYRF 855
           P++ LK+D      L  DE  I ++      A ++ +Q   +G++  EQ +       + 
Sbjct: 554 PVQKLKIDQGFVAGLPVDEDDIAIVRVIIALARSMGMQVHAEGIEQAEQASFLLQEECQL 613

Query: 856 GQGCALASP 864
           GQG     P
Sbjct: 614 GQGYWFGRP 622