Pairwise Alignments

Query, 876 a.a., GGDEF domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 830 a.a., two-component system response regulator from Magnetospirillum magneticum AMB-1

 Score =  218 bits (554), Expect = 2e-60
 Identities = 135/441 (30%), Positives = 223/441 (50%), Gaps = 2/441 (0%)

Query: 437 EIRQRRNMEAKLVHDAKHDALTGLPNRAMFMERLNHAIKHVRRHSLEQFALLFIDLDRFK 496
           +I  R+  E +L + A HD LT LPNR +F ERL  A+    R+     ALLFIDLD FK
Sbjct: 378 DITSRKQDEERLNYQANHDPLTRLPNRTLFQERLTRALTRAHRNQAI-VALLFIDLDFFK 436

Query: 497 LINDTMGHLEGDRFLIETATRLRSCIRSNDTLARLGGDEFVILLDTINDMNDARDVAERV 556
            +NDT+GHL GD  L + A RL SC+R  DT+ARL GDEF ++L+ I++  D   VA ++
Sbjct: 437 QVNDTLGHLAGDILLQQVAERLTSCVRQGDTVARLAGDEFTVILEEISEPRDGAVVAHKI 496

Query: 557 IRKISQSYHFGTIEFHSGASIGITISGNKLDTSESMLRNADTAMYQAKANGKGCYVIFDD 616
           +  +++ +     E    +SIG+ +  +    ++++++ AD AMY+AK  G+       +
Sbjct: 497 LSLLAEPFDLQGHEARISSSIGVALYPSDGGDAQTLIKLADAAMYRAKHQGRNACRFHSE 556

Query: 617 SASQQKMQDIAFENDFRQALQADELQLNFLPIVDLQTRQTRSLECRLSWEHPQWGSIPQE 676
           S + Q  + +A E+  R A++  E  L++ PI D ++    ++E  L W HP +G I   
Sbjct: 557 SINAQAFERLALESALRHAVERREFLLHYQPIFDARSGSVVAVEALLRWRHPDFGMIMPN 616

Query: 677 VLNKLAEQANLQVELDKYAIRLLDKCYHQLLISHGDNLDLHLMLSSQHLKHKHVLRGLKT 736
               LAE+  L + + K+ +    +     L +    L + + LSS+ L+   ++  +  
Sbjct: 617 QFLPLAEETGLIMPVGKFVLDEACRQAKAWLDAGHTGLKVGINLSSRQLRAPELIEDIAA 676

Query: 737 TLKQTQLPLSQLWLFFNEKALVQETENHISGFELLNKLGVNLGISHYGSGHSPLNSLLFL 796
            L+ + LP S L L   E A++ + ++  + F     LGV + I  +GSG+S    L  L
Sbjct: 677 ALEGSGLPPSALELDVPESAIIDKGQDVDAIFTQFKTLGVRMAIDAFGSGYSSFAFLRKL 736

Query: 797 PLKGLKLDANITKQ-LQDEQHIKLMSAYQKAASTLELQTFVDGLQSPEQINIFHALGYRF 855
           P   LK+D    +      +  ++++A    A  L L     G+++ EQ+          
Sbjct: 737 PSNTLKIDQGFVRDAASGAEESEIVTAIVAVARGLHLSVVAPGIETEEQLAHLVKYDCDM 796

Query: 856 GQGCALASPFALVETQQLVCA 876
            QG   A P    E  + + A
Sbjct: 797 VQGFLFAHPMPAEELTEFLRA 817