Pairwise Alignments

Query, 639 a.a., GGDEF domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 1098 a.a., histidine kinase from Pseudomonas simiae WCS417

 Score =  105 bits (261), Expect = 1e-26
 Identities = 110/429 (25%), Positives = 204/429 (47%), Gaps = 51/429 (11%)

Query: 240  DPASGLPNRQYVVSRLNGWLS----EPSSGALFLAKLDWLEEVHSKYGYQVRDETIRLLA 295
            DP + LPNR  ++ RL+  ++        GAL    LD  + ++   G+ V D  ++++ 
Sbjct: 664  DPLTNLPNRALLMDRLSQQIALLKRHNLRGALLFLDLDHFKHINDSLGHPVGDTVLKIVT 723

Query: 296  EKLVQQLNEITPSVIARIAAFEFAFLVTDVE--HDQISKYLQTLIRTINQEISKA----G 349
             +L   +       +AR+   EF  L++ ++    ++S  +Q L  T+ + +S+     G
Sbjct: 724  ARLEASVR--MEDTVARLGGDEFVVLLSGLDGTRTEVSNQVQELADTLRELLSEPMFLDG 781

Query: 350  CKPNENFAIGVAERVGQMKV-SDILAQADNALQKALKD---NKTFHWFETTEQQIFTREQ 405
             +     +IGVA         +D+L +AD AL +A KD   N T  +  + ++    R +
Sbjct: 782  HRLQVTPSIGVALIPDHGSTPADLLKRADIALYRA-KDSGRNTTQMFHNSMQKTASERLR 840

Query: 406  WRDNLSHAISNKKFKFRWQPIQFCNGDGVTQRELYCQLE---LGDKLTHAGQFMPYIE-- 460
               +L  A+S  +F   +QP     G+ +   E   + +   LG +     +F+  +E  
Sbjct: 841  METDLRLALSRGEFSVHYQPQVDARGNRIVGAEALVRWQHPQLGAQ--SPSEFIKVLEDS 898

Query: 461  --LLSLGS-LLDKCLIETVYEQKLLERNYEPLAINLTHQSLSDSQFHQWLNHFLRNAPQV 517
              +L +G+ +LD+      ++Q + E   +PL  +L   ++S  QF Q  N F+    +V
Sbjct: 899  GLILEVGTWILDEAC--AAFQQLIAEGLVDPLNFSLC-VNISPRQFRQ--NDFVE---RV 950

Query: 518  ER-----------MCFEIPEAGVYSDLESCTRLCNIIRDNGAKFGIDHFGRQFGSMSYLQ 566
            ER           +  EI E  V  +L+        ++  G  F +D FG  + S++YL+
Sbjct: 951  ERSLKQHKLPFSLLKLEITEGIVIQNLDDTISKMRRLKKLGVSFAMDDFGTGYSSLTYLK 1010

Query: 567  GLRPSYVKLDQSFAYYDEASH---NSELCRAIINVAKGLDIQVIVTGIQEKAQLERFNEL 623
             L    +K+DQSF    +A+H   ++E+ RAI+ +A+ L+++VI  G++ + QL     L
Sbjct: 1011 RLPVDALKIDQSFV--RDATHDPNDAEIIRAIVAMARSLNLEVIAEGVETQDQLAFLQGL 1068

Query: 624  KTDAYQGFI 632
                YQG++
Sbjct: 1069 GCHLYQGYL 1077