Pairwise Alignments

Query, 639 a.a., GGDEF domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 555 a.a., GGDEF domain protein from Pseudomonas putida KT2440

 Score =  103 bits (257), Expect = 2e-26
 Identities = 110/422 (26%), Positives = 178/422 (42%), Gaps = 28/422 (6%)

Query: 230 VGSLRKKNLTDPASGLPNRQYVVSRLNGWLSEPSSGALFLAKLDW--LEEVHSKYGYQVR 287
           V +L++    DP +G+ NRQ   + LN  L+E     + L  LD      V+   G+Q  
Sbjct: 117 VATLQRLAEQDPLTGIANRQGFQALLNARLAENEGRGVALGHLDLDNFRHVNDALGHQSG 176

Query: 288 DETIRLLAEKLVQQLNEITPSVIARIAAFEFAFLVTDVEHDQ------ISKYLQTLIRT- 340
           D  I  +  +L  QL       +AR+ + EFA L+ D   D         + ++ L    
Sbjct: 177 DRLILQVVARLKHQLE--AGDQLARLGSDEFALLI-DTRRDANRAEWIAERIVEALAEPY 233

Query: 341 -INQEISKAGCKPNENFAIGVAERVGQMKVSDILAQADNALQKAL-KDNKTFHWF-ETTE 397
            I+ E    GC      ++G+A    Q     ++  A  A+++A      TFH F E   
Sbjct: 234 WIDGESLLLGC------SLGIAHARAQSGADPLMWHAHIAMRQAKGSQGCTFHVFNERIN 287

Query: 398 QQIFTREQWRDNLSHAISNKKFKFRWQP-IQFCNGDGVTQRELYCQLELGDKLTHAGQFM 456
           +   +       L  A+   + +  +QP +   +G  V    L         L    +F+
Sbjct: 288 RNARSLADLESELRRALRRDELELHYQPRLNLADGRIVGLEALVRWRHAERGLLPPSEFV 347

Query: 457 PYIELLSLGSLLDKCLIETVYE--QKLLERNYEPL--AINLTHQSLSDSQFHQWLNHF-L 511
           P  E   L   L   +I       Q L ER  EPL  A+NL+ +   DSQ    L+   L
Sbjct: 348 PLAEQSGLIVPLGYWVISRALRDMQALCERGLEPLHMAVNLSFRQFQDSQLLATLSRLIL 407

Query: 512 RNAPQVERMCFEIPEAGVYSDLESCTRLCNIIRDNGAKFGIDHFGRQFGSMSYLQGLRPS 571
            +      + FE+ E  V    E   +  + +   G +F +D FG  F S  +L  L  +
Sbjct: 408 EHGVDARWLEFELTETAVMRRNEVVRQTMDALGRLGVRFSLDDFGTGFSSFVHLNSLPIT 467

Query: 572 YVKLDQSF-AYYDEASHNSELCRAIINVAKGLDIQVIVTGIQEKAQLERFNELKTDAYQG 630
            +K+D+SF A  +    N +L  A+IN+A  L+++V+  G++ + QL        D  QG
Sbjct: 468 LLKVDRSFVAEMEMREENRKLVHAMINLAHNLNLEVVAEGVESEEQLTLLRGFGCDQVQG 527

Query: 631 FI 632
           F+
Sbjct: 528 FL 529