Pairwise Alignments

Query, 639 a.a., GGDEF domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 562 a.a., Sensory box protein from Pseudomonas putida KT2440

 Score =  101 bits (251), Expect = 1e-25
 Identities = 109/416 (26%), Positives = 191/416 (45%), Gaps = 26/416 (6%)

Query: 240 DPASGLPNRQYVVSRLNGWLS----EPSSGALFLAKLDWLEEVHSKYGYQVRDETIRLLA 295
           D  +GLPNR Y+   LN  L+    E  S A+ +  LD  + V+  YG+ V D    LL 
Sbjct: 131 DVLTGLPNRAYLSDLLNQALAYSRCEGISLAVCMLDLDGFKAVNDGYGHAVGD----LLL 186

Query: 296 EKLVQQLNEITPS--VIARIAAFEFAFLVTDVEHD-QISKYLQTLIRTINQEISKAGCKP 352
            ++ Q+L  I      +AR++  EF  ++ DV+ + Q+   LQ ++R +           
Sbjct: 187 VEVAQRLKSILRGGDAVARLSGDEFVLILRDVDDEHQLHAALQRVLRALAAPCVVREHTL 246

Query: 353 NENFAIGVAERVGQMKVSDILAQ-ADNALQKALKDNKT-FHWFETT-EQQIFTREQWRDN 409
           + + +IGV       + +D L + AD A+  A +  +  +H F+ + EQ++    Q    
Sbjct: 247 SLSASIGVTLYPQDDEDADTLVRHADQAMYVAKQRGRNRYHLFDVSQEQELKATHQTVAR 306

Query: 410 LSHAISNKKFKFRWQP-IQFCNGDGVTQRELYCQLELGDKLTHAGQFMPYIELLSLGSLL 468
           +  A+ N +    +QP +    G  +    L      G  +   G F+P++E   L   +
Sbjct: 307 VRRALRNGELCLYYQPKVNLRTGKVLGFEGLLRWQRPGRGVVPPGDFLPWVEQTDLIVEI 366

Query: 469 DKCLIETVYEQ-KLLERNYEP--LAINLTHQSLSDSQFHQWLNHFLRNAPQVER--MCFE 523
            + +I     Q +  +R  +P  L++N+  + L  S F + L   L   P V+   +  E
Sbjct: 367 GEWVIGQALSQLQAWQRQGQPWSLSVNIAARHLQRSDFAERLQQLLAAYPAVDPALLDLE 426

Query: 524 IPEAGVYSDLESCTRLCNIIRDNGAKFGIDHFGRQFGSMSYLQGLRPSYVKLDQSFAYYD 583
           I E+    +L+  +R  +  R  G +F +D FG  + S+SYL+ L    +K+DQSF    
Sbjct: 427 IVESVAIDNLQHVSRCLDACRALGVRFSLDDFGTGYSSLSYLKRLPTQTIKIDQSFV--R 484

Query: 584 EASHNSE---LCRAIINVAKGLDIQVIVTGIQEKAQLERFNELKTDAYQGF-IAPP 635
           +  H+ +   L  A+I +A+    +VI  G++          L  +  QG+ IA P
Sbjct: 485 DILHDQDDLALTEAVIGLARAFGREVIAEGLESVEHGRVLMGLGCELAQGYCIARP 540