Pairwise Alignments

Query, 639 a.a., GGDEF domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 648 a.a., GGDEF domain protein from Pseudomonas putida KT2440

 Score =  192 bits (488), Expect = 4e-53
 Identities = 182/658 (27%), Positives = 309/658 (46%), Gaps = 48/658 (7%)

Query: 1   MTLFRQIYSLLFSLFLLVVASLGY-VQFTETQSFLTKQMESDLNNASTSLGLMLTPALEA 59
           M+LF+Q+  L   LFL+V  S  + V    ++S    Q+ S   +A+T+L L LTP ++ 
Sbjct: 1   MSLFKQLL-LAICLFLVVAFSGSFMVSLESSRSQYVNQLRSHAQDAATALALSLTPNID- 58

Query: 60  GDTVAAETLVNVIFEGGYYNNIKLIWMVDGKQQEWNNPIKID--------DVPQWFINLN 111
            D    E +V+ IF+ GYY +IK++ +        +N + ++         VP WF+ L 
Sbjct: 59  -DPAMVELMVSSIFDSGYYASIKVVDL-------GSNAVLVERHAEPDPGGVPLWFVRLI 110

Query: 112 LFKTIKKESTITSGWLQLAQLEITAHPGFGYHELWRIMSNTLIVFSLLFLVAIFTARLGL 171
             +    ++ ++ GW Q A++E+ +HP F   +LW+    +L    L    +     L L
Sbjct: 111 GLEAAGGDAIVSRGWQQAARVEVISHPMFAIAKLWQSALGSLGWLLLCGAASAVLGALLL 170

Query: 172 TWILKPLNALSEHAKKIAARQFGPDMPLPSTTELKDLVTAFNSMSAQLKHLFQSLDEEVG 231
              L+PL+ + E +  IA R+F     LP T EL+ +V A N M  +LK LF    E   
Sbjct: 171 RRQLRPLDYMVEQSHAIARREFLSLPELPRTPELRRVVQAMNQMVEKLKALFTEQAERSE 230

Query: 232 SLRKKNLTDPASGLPNRQYVVSRLNGWLS---EPSSGALFLAKLDWLEEVHSKYGYQVRD 288
            LR ++  D  +GL NR+Y   +LN  +S   +  +G L L ++  L  ++++ G Q  D
Sbjct: 231 RLRAESYQDSLTGLSNRRYFEMQLNNRVSNLEDARAGYLLLLRVQGLAGLNARLGGQRTD 290

Query: 289 ETIRLLAEKLVQQLNEI--TPSVIARIAAFEFAFLVTDVEHDQISKYLQTLIRTINQEIS 346
           + ++ + E+L +       T  +I+R    EFA L   + H++     Q L  T+ Q + 
Sbjct: 291 QLLQAVGEQLRRTCASYPETNDLISRSRGGEFAVLAPGMVHEEAVHLAQALEATL-QSLH 349

Query: 347 KAGCKPNENFA-IGVAERVGQMKVSDILAQADNALQKALKDNKTFHWFETTEQQIF---- 401
           + G    +  A IG+A          +L  AD AL +A  +N+    +   EQ +     
Sbjct: 350 ETGASDIDPVACIGLAPFSPGDSPQALLKLADEALARA--ENQPTPGWVCLEQGVAAVAA 407

Query: 402 -TREQWRDNLSHAISNKKFKFRWQPIQFC-NGDGVTQRELYCQLELGD-KLTHAGQFMPY 458
            ++  W + L  A  N  F+  +QP+  C +   V   ++  +L  G  +   AG+F+P+
Sbjct: 408 DSQHAWHERLDQAFINGHFELFFQPVIECASSQRVLHHKVISRLRDGQGEALPAGRFLPW 467

Query: 459 IELLSLGSLLDKCLIETVYEQKLLERNYEPLAINLTHQSLSDSQFHQWLNHFL-RNAPQV 517
           +E       LD  ++E V     L  + + LA+NL+  +L+D +  Q +   L +NA   
Sbjct: 468 LERFGWMPRLDVLVLEKVLAH--LRGHDQVLALNLSAATLADPKALQRVFELLGQNAALG 525

Query: 518 ERMCFEIPEAGV--YSDLESCTRLCNIIRDNGAKFG--IDHFGRQFGSMSYLQGLRPSYV 573
            R+ FEI E  +   + LE  TR     R +G  FG  +  FG +F  +  L  L  +Y+
Sbjct: 526 PRLVFEIGEEQLPEQAALEQLTR-----RLHGLGFGLALQRFGGRFSMIGNLAHLGLAYL 580

Query: 574 KLDQSF-AYYDEASHNSELCRAIINVAKGLDIQVIVTGIQEKAQLERFNELKTDAYQG 630
           K+D S+    D   H      AI   A  +D+ +I   ++ + +     E+     QG
Sbjct: 581 KIDGSYIRNIDHEQHKRLFIEAIQRAAHSIDLPLIAERVETEGERLVLLEMGVGGIQG 638